PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G036400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 677aa    MW: 79113.4 Da    PI: 8.3435
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G036400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.91.4e-2231123290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                         +Yn+YA   GF vrk+  +++  ++   +r f+Cskeg+r+ ++ +   ++++r++ra + +gCka+l+++++  +g+w v +++ eHnH+
  Brast09G036400.1.p  31 YYNSYALLKGFGVRKEDLERKXGTNIAFRRLFCCSKEGYRAVKHFNatnRKEKRQPRALSSCGCKARLEIELHMeSGEWFVRNFVDEHNHP 121
                         9********************999999*************999888777899999*****************998**************** PP

                FAR1  89 la 90 
                         la
  Brast09G036400.1.p 122 LA 123
                         97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-2030123IPR004330FAR1 DNA binding domain
PfamPF105511.9E-32246339IPR018289MULE transposase domain
PROSITE profilePS509669.198517556IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MEPGVVSLED LEEYYMVVNQ TFRSEEEGYR YYNSYALLKG FGVRKEDLER KXGTNIAFRR  60
LFCCSKEGYR AVKHFNATNR KEKRQPRALS SCGCKARLEI ELHMESGEWF VRNFVDEHNH  120
PLAKPDHTAF IRSHHGLSDA QKADVFEYGI GGLRTHQIME IMEKQHGCYD KVGFVSRDLY  180
NFVGKYKKER IEGRDAEFVL NYMSARKNRD GEFFYKYKTD EEGHLXNLXW ADXQSRMXYD  240
AFGGXVVFDS TYXVNKYNLP FVPFIGVNHH RSTTVFGCAI VSDETVASYV WLLKAFLEAS  300
QQNPPRSVMT DGDRVMAKAI SMVFPGTDHR LCSWHVEQNM IRHLRNPKLG DFRKFVYHAM  360
KVDDFERRWV EFKVKYEITE KDGWINRMYE LRKKWSKAYT KGRYFLGMQS NQLSESLNSR  420
LHKNLDRTTW QTWRMSLVDL LEHYDHCLLR IRMKESQLDA EASQTVPFID LHAEPLERSA  480
ARTYTPEMFK RVKVEIILLV EWEIAEVTRN DERHVKYDVR FSFVGPLLKS VSCPCLKFDS  540
EDIPCTHIFS VLKYLGLLTI PSCCVQQRWT MKAKPAFVAB RDGNLHEWSZ RMNRYHELRN  600
MASLHLFKAS RSLEVSKRVI DFLQTISDEE MEDDDSDEAA KVGPFPPYFS GSNQASTHTV  660
LDPKPIKSKG APSKKR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G036400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169082.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020169083.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020169084.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020169085.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K2DUR80.0A0A2K2DUR8_BRADI; Uncharacterized protein
STRINGTraes_2DL_10A3AF467.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-106FAR1-related sequence 5