PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G249300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 311aa    MW: 34543.5 Da    PI: 6.6429
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G249300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.21.7e-32101461128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka..eekewyfFskrd.kkyatgkrknratksgyWkatg 87 
                         +p GfrF+Ptd+elvv+yL+++v+g++++l   i+++di k++P +Lp k++    + ++wyfF+ +d +ky++  r+nr++++g+Wk +g
  Brast08G249300.1.p  10 VPIGFRFEPTDQELVVDYLQRRVAGQPCPL--PIANIDIRKFNPCNLPsKAM-PlfGGRQWYFFAMKDhRKYSKRPRPNRSAATGFWKVKG 97 
                         589************************999..8***************4433.235889*****877527889999****99********* PP

                 NAM  88 kdkevlsk..kgel........vglkktLvfykgrapkgektdWvmheyrl 128
                         + + +  +  +           + +kk+ vf+ g  p+ +kt Wvmh y l
  Brast08G249300.1.p  98 NGELISPQqnH--GdvivdlqpIAIKKVRVFHLGCPPTERKTPWVMHTYCL 146
                         *9988886541..245666666***************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-384165IPR003441NAC domain
PROSITE profilePS5100537.79910166IPR003441NAC domain
PfamPF023651.4E-1911145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAMPILLSNV PIGFRFEPTD QELVVDYLQR RVAGQPCPLP IANIDIRKFN PCNLPSKAMP  60
LFGGRQWYFF AMKDHRKYSK RPRPNRSAAT GFWKVKGNGE LISPQQNHGD VIVDLQPIAI  120
KKVRVFHLGC PPTERKTPWV MHTYCLVGPI PLDCTIEWVL CKVFRDTKMI LPPPPPPGPG  180
PAEIQQLQDS MRGMMISTPS NIVMYPSLSS PTPKQAPDNY QELYHHHHHH HQMQINNDDV  240
VDDEAISEVI IGGGGPMFAS RATMANSAAS TSGATTVGTN HQEEEDGATD SEPRVIDNMV  300
MDNSSFADLE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-36416511164NO APICAL MERISTEM PROTEIN
1ut4_B3e-36416511164NO APICAL MERISTEM PROTEIN
1ut7_A3e-36416511164NO APICAL MERISTEM PROTEIN
1ut7_B3e-36416511164NO APICAL MERISTEM PROTEIN
4dul_A3e-36416511164NAC domain-containing protein 19
4dul_B3e-36416511164NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17983KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G249300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314606.11e-107NAC domain-containing protein 41
TrEMBLA0A0Q3G9Z81e-104A0A0Q3G9Z8_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5006622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.23e-38NAC family protein