PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G237900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Dof
Protein Properties Length: 364aa    MW: 38612.8 Da    PI: 8.6736
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G237900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.91.9e-3788147261
              zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                         +e+ lkcprCds+ntkfCy+nnyslsqPr+fC+aCrryWt+GGalrnvPvGgg r++ k+
  Brast08G237900.1.p  88 PEQGLKCPRCDSANTKFCYFNNYSLSQPRHFCRACRRYWTRGGALRNVPVGGGYRRHAKR 147
                         57899*************************************************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-3772146IPR003851Zinc finger, Dof-type
PfamPF027016.8E-3290146IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.67792146IPR003851Zinc finger, Dof-type
PROSITE patternPS01361094130IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MIFPPASFLD SSSWNDNNQI DNNFQRHPQS HQQQPSAADG SCHEQLLQIQ QQQQLPEGHG  60
GHGGQQAASG IKAMSMSERA RLARVPLPEQ GLKCPRCDSA NTKFCYFNNY SLSQPRHFCR  120
ACRRYWTRGG ALRNVPVGGG YRRHAKRAKQ PKTNPSSSSA PAPATTTTTP APAPLPNVNN  180
QQQLAPSAAA GLLPPLLRLA DFDAMSLGSA FVSGAGGMAG KPSSGSVDVP AGCYSLGGGG  240
GAMEQWRSLQ QIPAGFPFFH AMAAADHHLA APPAPAAMAP GMFHYLGLNG NNGEVVGEEE  300
DHQFHHSSAT TMPSSKREDG FTRGANSIIS LYGTNGDHHH QQLNAGYTSS YNSNTAARGN  360
HLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G237900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM0843531e-101AM084353.1 Hordeum vulgare subsp. vulgare dof5 gene for dof zinc finger protein 5, exons 1-2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753831.11e-159dof zinc finger protein DOF3.2 isoform X2
TrEMBLI1HM901e-153I1HM90_BRADI; Uncharacterized protein
STRINGBRADI2G37130.11e-154(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.13e-40OBF-binding protein 3