PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast08G227000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | AP2 | ||||||||
Protein Properties | Length: 499aa MW: 54109.2 Da PI: 6.4027 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.3e-17 | 167 | 216 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Brast08G227000.1.p 167 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 216 78*******************......55************************997 PP | |||||||
2 | AP2 | 40.3 | 7.9e-13 | 259 | 309 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+ + eAa+a+++a+ k +g Brast08G227000.1.p 259 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEVEAARAYDKAAIKCNG 309 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.15E-16 | 167 | 225 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.8E-9 | 167 | 216 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.794 | 168 | 224 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-17 | 168 | 225 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-32 | 168 | 230 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.22E-11 | 168 | 226 | No hit | No description |
SuperFamily | SSF54171 | 1.18E-16 | 259 | 318 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.29E-24 | 259 | 319 | No hit | No description |
Pfam | PF00847 | 5.9E-8 | 259 | 309 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-15 | 260 | 317 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-31 | 260 | 323 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.277 | 260 | 317 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-6 | 261 | 272 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-6 | 299 | 319 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence Send to blast |
MELDLNVEEK LPSAAMAAAA AAARSDSGTS ESSVLNGETS AAAEEGSSST PPPPMRAALE 60 FSILRASASA EGENDVGDDE EEEEATPSPP WPPQELVTRE LFPSAMVPPP QQQHWAELGF 120 FRPPPPQPAD VRLLQHAHAP PPAPPPPPAA QPPPAKKSRR GPRSRSSQYR GVTFYRRTGR 180 WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGVDAD INFNLSDYED DMKQMKGLSK 240 EEFVHVLRRQ STGFSRGSSK YRGVTLHKCG RWEARMGQFL GKKYIYLGLF DNEVEAARAY 300 DKAAIKCNGR EAVTNFEPST YEGELLTEVA SEGADVDLNL SISQPASQSP RTDKNSLGLQ 360 LDHGSLQGSE VKRAKIDAPS ELAMLPHRQY PLLAEHPPIW PGQSYPMFLN NEGAAREQHS 420 RRPEVGIGGV PSWAWRVSHP PPTLPLPLFS SSSSSSSPAA ASSGFYNTAT TTAAPAATPA 480 SFRFDPMAPS SSSSYHHR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast08G227000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010231785.1 | 0.0 | floral homeotic protein APETALA 2 isoform X1 | ||||
Swissprot | B8AXC3 | 0.0 | AP21_ORYSI; APETALA2-like protein 1 | ||||
TrEMBL | I1HMH9 | 0.0 | I1HMH9_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G37800.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10083 | 29 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 2e-96 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Brast08G227000.1.p |