PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G215200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 251aa    MW: 27575 Da    PI: 9.7705
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G215200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.11.1e-131050242
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                         ie++s+r++t+ +R++ ++KK +ELSvLC++ ++++++ +
  Brast08G215200.1.p 10 YIESDSKRKTTLKRRLKSLIKKVNELSVLCNVMALLVVYRP 50
                        69***********************************9955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.217148IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-17176IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-15160IPR002100Transcription factor, MADS-box
CDDcd002663.44E-19284No hitNo description
PRINTSPR004045.3E-6323IPR002100Transcription factor, MADS-box
PfamPF003196.0E-131153IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MARGKVRIEY IESDSKRKTT LKRRLKSLIK KVNELSVLCN VMALLVVYRP GEKQAVVWPP  60
MTEAIAIARD YKSINSEKLK KPLDGEGFVQ QLVEKERTRL LSYQRANDTK RIVLDLCVRR  120
DSLKLHGLKS TLRAASDRLK QKRSGISTSA PPQQQGMLPE QEMSLDAFFM ATPPAAPPAP  180
VVPMEMDPPH VADADPMTGL GSMVFDVLSA YDNGVGNGSV LLTPEELRDV LVRTGILTPP  240
PPNDDSSSGL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12026LKRRLKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G215200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233354.11e-86agamous-like MADS-box protein AGL80
TrEMBLA0A0Q3J4I93e-85A0A0Q3J4I9_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2921224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.12e-11AGAMOUS-like 96