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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast08G193000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 224aa MW: 23362.8 Da PI: 11.6105 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.3 | 9e-11 | 31 | 76 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+e+ErrRR riN +++Lr+++P a ++Ka+ L +v +k+L Brast08G193000.1.p 31 VHSEAERRRRGRINAHLATLRRMIPDA-----SQMDKASLLASVVSQVKDL 76 59************************9.....5789999988888777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.19E-12 | 18 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.986 | 27 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-8 | 31 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.2E-12 | 31 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.81E-8 | 32 | 78 | No hit | No description |
SMART | SM00353 | 8.8E-10 | 33 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 1.6E-5 | 120 | 171 | No hit | No description |
SuperFamily | SSF55021 | 1.26E-5 | 123 | 183 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MATTCRSLTA TPDLSSSSGR SVTEARRTLK VHSEAERRRR GRINAHLATL RRMIPDASQM 60 DKASLLASVV SQVKDLKRRA TAGTITHAAA AAAAGPIPPE ANEVTVRCCC ASAGGDRATH 120 IRAAVSCEDR PGLLAGLAGA ARGLGLRALR AEVASLGGRA HHVLVLRREE EGGDLGAGLR 180 PLEAAVRQAL AEVAFPEMAR GGGGSRSRRQ RLLEARCSVM HSV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast08G193000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003566506.1 | 1e-107 | transcription factor bHLH30 | ||||
TrEMBL | I1HLG4 | 1e-105 | I1HLG4_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G34600.1 | 1e-106 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3347 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 2e-16 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast08G193000.1.p |