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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast08G183200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | FAR1 | ||||||||
Protein Properties | Length: 288aa MW: 32365.5 Da PI: 6.5007 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 32.2 | 3.4e-10 | 102 | 140 | 52 | 90 |
FAR1 52 rrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + ++ +tr+gC a++++ +++dg w++++ + +HnH+l+ Brast08G183200.1.p 102 KDNSRSTRCGCSAMIRLLRTSDGGWYISEHRADHNHPLS 140 678999*******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.7E-7 | 102 | 140 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MEGMDPWFGS TDGFAGTDFS SGVSGAQESA GLCEVLDETV AMKSWTVQAS ALEATIRSFV 60 EKSHPVVVDP VVGTTFDSLD EAYSFYNLYS WEMDWDPGQT LKDNSRSTRC GCSAMIRLLR 120 TSDGGWYISE HRADHNHPLS SSCGEKLHWQ SHRHIDRHAR DLVAHLRENN FSLGKVYNII 180 GSYFGSMENI PFTKRSLKSL CGKISREQSD NDAVKTMDVF GKMHPEFKYT LQIDDESRMK 240 TLLWTSARCC EKYACFGVSS LLTRLTRLIF MTCCSDYSLG SRIIFRA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast08G183200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014753620.1 | 1e-94 | putative protein FAR1-RELATED SEQUENCE 10 | ||||
Refseq | XP_024313565.1 | 1e-94 | putative protein FAR1-RELATED SEQUENCE 10 | ||||
TrEMBL | A0A2K2DBZ7 | 1e-98 | A0A2K2DBZ7_BRADI; Uncharacterized protein (Fragment) | ||||
STRING | Traes_2DL_01DEC201E.2 | 6e-88 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP619 | 19 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 3e-09 | FAR1-related sequence 11 |
Link Out ? help Back to Top | |
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Phytozome | Brast08G183200.1.p |