PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G178700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 182aa    MW: 20621.5 Da    PI: 9.2827
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G178700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.91.5e-30421811121
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra... 77 
                         lp+G+rF+Ptd+el+ e+L+ kv +        +   +    +i+   +i++++P++Lp  v+++ ++ +fF++++k+y+tg+rk+r+   
  Brast08G178700.1.p  42 LPVGVRFDPTDQELI-EHLETKVMDGGsrahplI---DdfipTIQGEdGICYTHPEKLP-GVTTNGQSKHFFHRSSKAYTTGTRKRRKiqa 127
                         79*************.99****999885665442...133334666646**********.556678899******************8789 PP

                 NAM  78 .........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdW 121
                                   ++ +W++tgk++++++ +g+++g+kk+Lv+y   g+++k+ekt+W
  Brast08G178700.1.p 128 esdqpnsksCAETRWHKTGKTRPLMV-DGRQKGCKKILVLYtsFGKHRKPEKTNW 181
                         99999888766899************.999***********5547999999**** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-2933181IPR003441NAC domain
PROSITE profilePS5100526.5142181IPR003441NAC domain
PfamPF023657.3E-1243181IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MDRDHPGYSM IDAKLQEHQI CASRRCTSCG HELDMPKDMM GLPVGVRFDP TDQELIEHLE  60
TKVMDGGSRA HPLIDDFIPT IQGEDGICYT HPEKLPGVTT NGQSKHFFHR SSKAYTTGTR  120
KRRKIQAESD QPNSKSCAET RWHKTGKTRP LMVDGRQKGC KKILVLYTSF GKHRKPEKTN  180
W*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G178700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754986.11e-124NAC domain-containing protein 75 isoform X1
RefseqXP_024315135.11e-124NAC domain-containing protein 75 isoform X1
RefseqXP_024315136.11e-124NAC domain-containing protein 75 isoform X1
SwissprotQ9M0F82e-90NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A0Q3K8E91e-123A0A0Q3K8E9_BRADI; Uncharacterized protein
STRINGBRADI2G33307.11e-102(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.17e-93NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]