PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G170700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 596aa    MW: 68999 Da    PI: 6.8713
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G170700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.73e-2654141190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         +fYn+YA+++GFs+r+ +++k k++ +i +rtf Cs++g+r e+k++ ++   +r+etr+gC+a++k++++ +g ++v+++e  HnH la
  Brast08G170700.1.p  54 SFYNKYASTIGFSIRRGSHHKVKNSSTIQQRTFLCSRQGSRGEDKRE-DTFTYSRPETRCGCEAHMKISLR-NGFYYVYEFEATHNHILA 141
                         5*******************************************999.99999******************.***************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.2E-2254141IPR004330FAR1 DNA binding domain
PfamPF105511.5E-28263357IPR018289MULE transposase domain
PfamPF044347.2352369IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.409534581IPR007527Zinc finger, SWIM-type
PfamPF044347.7E-5552577IPR007527Zinc finger, SWIM-type
SMARTSM005750.0034556583IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MASSRISPRN HEGDDESQTC KDVQELTASN ATDRINERLP EVGMTFLSED EAYSFYNKYA  60
STIGFSIRRG SHHKVKNSST IQQRTFLCSR QGSRGEDKRE DTFTYSRPET RCGCEAHMKI  120
SLRNGFYYVY EFEATHNHIL ATETMVQYLR SQRKLSKAQI VNAELAKYVG ISNKATIDLM  180
AEEACGLENL GFTHEDMKNR LYSKRTLKAK QGDIGGVLEY MEKKVSEDVK FFYSIQVDED  240
DLITNMFWAD SKMVSDYAIF GDVICFDTTY RKLDDGRPFG LIVGVNNHKK TIVFGATLLY  300
DETAESFGWL FRTFRTVMSG KHPDTILTDE DAAIVKAISL VLPQSHHRLC VWHMNQNACK  360
HLAGVVQDYK KFNADFQHCI YDVEEEDEFI SAWNGMLDRY GLHDNTWLQR LFGKREQWAL  420
VYGRNTFSAH MSSTQRSETL NNELKSYISI KYDMLTFFEH FERLVADKRV EEVKCDFKAT  480
QTTPKLKAEA SNMLRQAGTT YTPAIFEMFQ EQVLRTLNYD TFLCDDSNTE QKTYKVQFHG  540
TTREHVVRFV PKEERVDCSC KKFEFAGIFC SHCLKILDIN NIKHIPQQYI LKRWT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G170700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683537.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2X0SDS20.0A0A2X0SDS2_WHEAT; Uncharacterized protein
STRINGTRIUR3_33706-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-120FAR1-related sequence 5