PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G164900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 265aa    MW: 28527.6 Da    PI: 10.28
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G164900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-1992141255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +++GVr+++ +gr++AeIrdps    rkr +lg+f+taeeAa+ ++ a+++l+g
  Brast08G164900.1.p  92 RFRGVRRRP-WGRYAAEIRDPSL---RKRLWLGTFDTAEEAAAVYDDAALRLKG 141
                         69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-2092149IPR016177DNA-binding domain
PROSITE profilePS5103222.19492149IPR001471AP2/ERF domain
PfamPF008472.1E-1192141IPR001471AP2/ERF domain
SMARTSM003801.2E-3292155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-2792149IPR001471AP2/ERF domain
PRINTSPR003671.4E-993104IPR001471AP2/ERF domain
CDDcd000181.10E-24100148No hitNo description
PRINTSPR003671.4E-9115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MEMPPSSMSA AAAAAPRSRR PKRVRVFFVD ADATDSEASG GEEELERGRR RVREVIDIDV  60
PAPAPPSIHP ARDRLLLARR RRAAMAGGDR RRFRGVRRRP WGRYAAEIRD PSLRKRLWLG  120
TFDTAEEAAA VYDDAALRLK GSLAVTNFVA AQAKTKAKSA AAPCNKPRMM TMKLRAPRET  180
SAPPPAQAED AVGSFYPFAP PASVLPPAFD LLCSGLGELC DLAAAPSAAS RAAEFDCLPW  240
WESEDFVTPT PTGLTASAVS VSVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1887148971Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G164900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1241418e-68AC124141.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0065C11, complete sequence.
GenBankAK1106138e-68AK110613.1 Oryza sativa Japonica Group cDNA clone:002-168-H06, full insert sequence.
GenBankAP0149618e-68AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126138e-68CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566397.14e-75ethylene-responsive transcription factor CRF3
TrEMBLI1HKP29e-74I1HKP2_BRADI; Uncharacterized protein
STRINGBRADI2G31480.11e-74(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131402226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.14e-09ERF family protein