PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G139100.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 414aa    MW: 45397 Da    PI: 9.0206
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G139100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.2e-1773132155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  Brast08G139100.2.p  73 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 132
                         57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.04E-1773142IPR016177DNA-binding domain
PfamPF008471.4E-1273132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-1574141IPR001471AP2/ERF domain
SMARTSM003801.2E-2474146IPR001471AP2/ERF domain
PROSITE profilePS5103219.83674140IPR001471AP2/ERF domain
PRINTSPR003674.2E-57586IPR001471AP2/ERF domain
PRINTSPR003674.2E-5122142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MASSNPAVAD AGLQKLEAVA AGEGPSFGAA LAVAAAPEQQ APRRPASARK ERVCTAKDRI  60
SRMTPCAAGK RSSIYRGVTR HRWTGRYEAH LWDKSTWNQN QNKKGKQVYL GAYDDEEAAA  120
RAYDLAALKY WGAGTQINFP VSDYTRDLEE MQIISKEDYL VSLRRKSSAF SRGLPKYRGL  180
PRQLHNSRWD ASLGQLLGND YMNLSCGKDV ALHGKFSGSF GLERKIDLTN YIRWWVPKKT  240
RQSDTSKAEE VADEIRAIES STQRTEPYKL PSLGLSSDSK PSSVGLSACS ILSQSDAFKS  300
FLEKSTQLSD ECTFSKEIDE GKVVVSVPAT GHDTSAVNMN MNGLLVQSAP YTLAPVMPTT  360
MKSTWNPADP STDNLFWSNF VLPSSQPVTM ATITTTTFAK NEVSSTDPFK SQE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G139100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3557490.0AK355749.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1025C06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566305.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
SwissprotQ8GWK21e-104AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A0Q3K6S40.0A0A0Q3K6S4_BRADI; Uncharacterized protein
STRINGBRADI2G26987.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.14e-94AP2 family protein