PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G104100.9.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 464aa    MW: 51213.9 Da    PI: 5.3186
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G104100.9.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.81.8e-11231259533
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee 33 
                         k err+++NReAAr+sR+RKka++++Le+
  Brast08G104100.9.p 231 KTERRLAQNREAARKSRLRKKAYVQQLET 259
                         88*************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.1E-7226273No hitNo description
SMARTSM003389.5E-5227286IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.22229273IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.63E-7231272No hitNo description
PfamPF001708.2E-9231259IPR004827Basic-leucine zipper domain
PROSITE patternPS000360234249IPR004827Basic-leucine zipper domain
PfamPF141443.1E-27312386IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MKLQGRFDLT VWEKADKKGG NERPIICRVL LFIVMVQGEE SSWRMASDRD RAVPFGQALA  60
YGIQVHAPAA PPANFLELQP AAAAYFGELG EALIHGTCAG VNPVMIEGDA HTKSAYLAAR  120
PPTLEIFPSW PMNHLQQPYS ANSQSVGSTD SSSAQNTMSQ AELVSPVSMR TDSGQQQEVL  180
MVTIDDYNYN QGLGPAAAAT VTAPSFQQHA GGQDKRKHGS TRKDDKLLDP KTERRLAQNR  240
EAARKSRLRK KAYVQQLETG RIRLQQIEQE LQRGRSQGLL TGGCSAPGDM SPGAVMFDME  300
YARWLDEDSK YMIELQSALQ AQILDGNLGT IVEECLRHYD ELFHLRGVLA RSDVFHLMTG  360
MWATQSERCF LWMAGFRPSE ILKMLTPQLD PLTEQQLLGM FNLQQSSEQA EEALAQGLHQ  420
LHQSLADAVG AGPLNDGADV ANYTSLMALA LDRLDNLESF YRE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G104100.9.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024315091.10.0transcription factor TGAL5 isoform X2
SwissprotQ6F2N00.0TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBLA0A2K2DA630.0A0A2K2DA63_BRADI; Uncharacterized protein
STRINGBRADI2G23890.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.31e-101bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]