PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast08G104100.2.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 507aa MW: 56195.2 Da PI: 6.122

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast08G104100.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.6	2e-11	198	226	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ Brast08G104100.2.p 198 KTERRLAQNREAARKSRLRKKAYVQQLET 226 88*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.2E-7	193	240	No hit	No description
SMART	SM00338	9.5E-5	194	253	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.22	196	240	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.1E-9	198	226	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.74E-7	198	239	No hit	No description
PROSITE pattern	PS00036	0	201	216	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.6E-27	279	353	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MVQGEESSWR MASDRDRAVP FGQALAYGIQ VHAPAAPPAN FLELQPAAAA YFGELGEALI 60 HGTCAGVNPV MIEGDAHTKS AAYLAARPPT LEIFPSWPMN HLQQPYSANS QSVGSTDSSS 120 AQNTMSQAEL VSPVSMRTDS GQQQEVLMVT IDDYNYNQGL GPAAAATVTA PSFQQHAGGQ 180 DKRKHGSTRK DDKLLDPKTE RRLAQNREAA RKSRLRKKAY VQQLETGRIR LQQIEQELQR 240 GRSQGLLTGG CSAPGDMSPG AVMFDMEYAR WLDEDSKYMI ELQSALQAQI LDGNLGTIVE 300 ECLRHYDELF HLRGVLARSD VFHLMTGMWA TQSERCFLWM AGFRPSEILK MLTPQLDPLT 360 EQQLLGMFNL QQSSEQAEEA LAQGLHQLHQ SLADAVGAGP LNDGADVANY TSLMALALDR 420 LDNLESFYRE ADNLRRQTLH RMRQILTTRQ TARCFLSIGE YHRHLRALSS IWAARPRENF 480 IMGENVSSTG TEFQVHQSQQ NQFSGL*

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MVQGEESSWR MASDRDRAVP FGQALAYGIQ VHAPAAPPAN FLELQPAAAA YFGELGEALI  60
HGTCAGVNPV MIEGDAHTKS AAYLAARPPT LEIFPSWPMN HLQQPYSANS QSVGSTDSSS  120
AQNTMSQAEL VSPVSMRTDS GQQQEVLMVT IDDYNYNQGL GPAAAATVTA PSFQQHAGGQ  180
DKRKHGSTRK DDKLLDPKTE RRLAQNREAA RKSRLRKKAY VQQLETGRIR LQQIEQELQR  240
GRSQGLLTGG CSAPGDMSPG AVMFDMEYAR WLDEDSKYMI ELQSALQAQI LDGNLGTIVE  300
ECLRHYDELF HLRGVLARSD VFHLMTGMWA TQSERCFLWM AGFRPSEILK MLTPQLDPLT  360
EQQLLGMFNL QQSSEQAEEA LAQGLHQLHQ SLADAVGAGP LNDGADVANY TSLMALALDR  420
LDNLESFYRE ADNLRRQTLH RMRQILTTRQ TARCFLSIGE YHRHLRALSS IWAARPRENF  480
IMGENVSSTG TEFQVHQSQQ NQFSGL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast08G104100.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024315094.1	0.0	transcription factor TGAL5 isoform X5
Swissprot	Q6F2N0	0.0	TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBL	A0A2K2DA63	0.0	A0A2K2DA63_BRADI; Uncharacterized protein
STRING	Traes_1DL_AFDF3B024.1	0.0	(Triticum aestivum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-136	bZIP family protein

Link Out ? help Back to Top
Phytozome	Brast08G104100.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]