PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G104100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 541aa    MW: 60151.9 Da    PI: 6.4603
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G104100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.52.2e-11232260533
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee 33 
                         k err+++NReAAr+sR+RKka++++Le+
  Brast08G104100.1.p 232 KTERRLAQNREAARKSRLRKKAYVQQLET 260
                         88*************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.3E-7227274No hitNo description
SMARTSM003389.5E-5228287IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.22230274IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.64E-7232273No hitNo description
PfamPF001709.9E-9232260IPR004827Basic-leucine zipper domain
PROSITE patternPS000360235250IPR004827Basic-leucine zipper domain
PfamPF141443.9E-27313387IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MKLQGRFDLT VWEKADKKGG NERPIICRVL LFIVMVQGEE SSWRMASDRD RAVPFGQALA  60
YGIQVHAPAA PPANFLELQP AAAAYFGELG EALIHGTCAG VNPVMIEGDA HTKSAAYLAA  120
RPPTLEIFPS WPMNHLQQPY SANSQSVGST DSSSAQNTMS QAELVSPVSM RTDSGQQQEV  180
LMVTIDDYNY NQGLGPAAAA TVTAPSFQQH AGGQDKRKHG STRKDDKLLD PKTERRLAQN  240
REAARKSRLR KKAYVQQLET GRIRLQQIEQ ELQRGRSQGL LTGGCSAPGD MSPGAVMFDM  300
EYARWLDEDS KYMIELQSAL QAQILDGNLG TIVEECLRHY DELFHLRGVL ARSDVFHLMT  360
GMWATQSERC FLWMAGFRPS EILKMLTPQL DPLTEQQLLG MFNLQQSSEQ AEEALAQGLH  420
QLHQSLADAV GAGPLNDGAD VANYTSLMAL ALDRLDNLES FYREADNLRR QTLHRMRQIL  480
TTRQTARCFL SIGEYHRHLR ALSSIWAARP RENFIMGENV SSTGTEFQVH QSQQNQFSGL  540
*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G104100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755255.10.0transcription factor TGAL5 isoform X1
RefseqXP_014755258.10.0transcription factor TGAL5 isoform X1
RefseqXP_014755259.10.0transcription factor TGAL5 isoform X1
RefseqXP_024315088.10.0transcription factor TGAL5 isoform X1
RefseqXP_024315089.10.0transcription factor TGAL5 isoform X1
RefseqXP_024315090.10.0transcription factor TGAL5 isoform X1
SwissprotQ6F2N00.0TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBLA0A2K2DA630.0A0A2K2DA63_BRADI; Uncharacterized protein
STRINGTraes_1DL_AFDF3B024.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38093166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.31e-135bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]