PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Brast08G081600.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

GRAS

Protein Properties

Length: 492aa MW: 51443.9 Da PI: 6.4708

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast08G081600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	255.1	2.5e-78	97	476	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 + lL+ecA a+s g+l+ a+ +L +ls++asp++ + +Rl+a+f++ALaarl++s+ ++ + lpp++++ s aa+++ ++vsP+ Brast08G081600.1.p 97 IALLMECAVAMSVGNLADANGALLELSQTASPYAaSCGERLVAHFARALAARLMSSWVGVLAPLPPQHAA-AGISGIHAAFRAMYNVSPFA 186 689****************************96778**********************999998.56777778999***** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqG..lQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179 + ++l++Nqa+l+a+ g++ vH++D+d+ G lQW++Ll aLa+Rp+gpp lR+Tg+g+ s l+ g++La +A +lg+pfef Brast08G081600.1.p 187 RAAYLACNQAVLDAFRGQRVVHVVDMDVVPGgaLQWLSLLPALAARPGGPPaLLRVTGFGA----SPGPLHDAGSQLAGLAGKLGLPFEFY 273 ************************988447*********8888789***....9*********************** PP GRAS 180 vlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...........sFlerfl 258 + v kr d l L k+ gEa+aV++ h l+d ++ + ++l + l+P+v++vv+q + e Fl+rf+ Brast08G081600.1.p 274 A-VPKRPGDAGLPLLPGKRpGEAVAVHWLR--HALYDAAGDEAA----AMRLARWLEPRVMTVVDQAQAAQPErpssssspsagGFLDRFV 357 .799999999*77777****98..888765565555....**************8554333356667777779** PP GRAS 259 ealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrer.hetlekWrerleeaGFkpvplsekaakqaklllrkvk.s 346 al++ysa+fd+l a p+ r+ E +lgrei nv+a +g +r r +e + W++ l + GF ++ + + a++l ++ + Brast08G081600.1.p 358 CALHHYSAVFDALGAARPAGGdASRHLAESGVLGREIGNVLAVAGPSRSGRrREAGAGWQAELARHGFLRARWGAGG-ARARMLAGACPaG 447 *********66656554499*******************98761566778**********99875.579****99 PP GRAS 347 dgyrveeesgslv.lgWkdrpLvsvSaWr 374 gy+v ++++ v lgWk+ pL++vS W+ Brast08G081600.1.p 448 LGYTVADDHDGTVrLGWKGTPLYAVSTWT 476 **88666666************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	43.68	70	455	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.7E-76	97	476	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MQFHDHHQHQ YLYSSSSGSA GPFLPHHHAA FIQADEGRCA GSGKDVAQGE SLVEILDEAP 60 AGAVEERKGA VDHEAAEEEE EEEEEEESAE AHGVRMIALL MECAVAMSVG NLADANGALL 120 ELSQTASPYA ASCGERLVAH FARALAARLM SSWVGVLAPL PPQHAAAGIS GIHAAFRAMY 180 NVSPFARAAY LACNQAVLDA FRGQRVVHVV DMDVVPGGAL QWLSLLPALA ARPGGPPALL 240 RVTGFGASPG PLHDAGSQLA GLAGKLGLPF EFYAVPKRPG DAGLPLLPGK RPGEAVAVHW 300 LRHALYDAAG DEAAAMRLAR WLEPRVMTVV DQAQAAQPER PSSSSSPSAG GFLDRFVCAL 360 HHYSAVFDAL GAARPAGGDA SRHLAESGVL GREIGNVLAV AGPSRSGRRR EAGAGWQAEL 420 ARHGFLRARW GAGGARARML AGACPAGLGY TVADDHDGTV RLGWKGTPLY AVSTWTWCAT 480 TTTHGHVRGF D*

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MQFHDHHQHQ YLYSSSSGSA GPFLPHHHAA FIQADEGRCA GSGKDVAQGE SLVEILDEAP  60
AGAVEERKGA VDHEAAEEEE EEEEEEESAE AHGVRMIALL MECAVAMSVG NLADANGALL  120
ELSQTASPYA ASCGERLVAH FARALAARLM SSWVGVLAPL PPQHAAAGIS GIHAAFRAMY  180
NVSPFARAAY LACNQAVLDA FRGQRVVHVV DMDVVPGGAL QWLSLLPALA ARPGGPPALL  240
RVTGFGASPG PLHDAGSQLA GLAGKLGLPF EFYAVPKRPG DAGLPLLPGK RPGEAVAVHW  300
LRHALYDAAG DEAAAMRLAR WLEPRVMTVV DQAQAAQPER PSSSSSPSAG GFLDRFVCAL  360
HHYSAVFDAL GAARPAGGDA SRHLAESGVL GREIGNVLAV AGPSRSGRRR EAGAGWQAEL  420
ARHGFLRARW GAGGARARML AGACPAGLGY TVADDHDGTV RLGWKGTPLY AVSTWTWCAT  480
TTTHGHVRGF D*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	3e-83	81	476	3	378	Protein SCARECROW
5b3h_D	3e-83	81	476	3	378	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast08G081600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003566122.2	0.0	protein SCARECROW 2
TrEMBL	A0A2K2D9T1	0.0	A0A2K2D9T1_BRADI; Uncharacterized protein (Fragment)
STRING	BRADI2G22010.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13813	25	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	6e-42	GRAS family protein

Link Out ? help Back to Top
Phytozome	Brast08G081600.1.p