PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G074300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-YC
Protein Properties Length: 279aa    MW: 30954.7 Da    PI: 5.3068
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G074300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC58.41.5e-186861898
               NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                        ++++P  rikki++adedv +i+  +Pvl+ska elf+ +l  r+++ + ++  +t+  s +++++ + d++dfl ++v +
  Brast08G074300.1.p  6 DTRFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYNITVQKGVKTVSSSHLKQCLHSYDVYDFLKNVVNK 86
                        5789************************************************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.1E-24371IPR009072Histone-fold
SuperFamilySSF471134.95E-20488IPR009072Histone-fold
PfamPF008087.9E-18871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MRKKLDTRFP APRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YNITVQKGVK  60
TVSSSHLKQC LHSYDVYDFL KNVVNKIPDL GAPDTSADDK LAKRRKHAED ESEEESKRTR  120
NEVASHASNG RGRGRGRGRG RRGGRGAERE TEYHELAPCE SKPVHLKVEI GDVGSDTIET  180
KEPTPLSNAR ASLRNIDLNL DLDEYEDTVA QFQPEAPVAS VAAPSAGPSV SQTIEDVKTK  240
DFLGWQLPEM SKMGMDPVQF ALSLDHRLEV DEDYDNEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-21271574Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130139RGRGRGRGRG
2130140RGRGRGRGRGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G074300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568199.10.0dr1-associated corepressor
TrEMBLI1HI490.0I1HI49_BRADI; Uncharacterized protein
STRINGBRADI2G21290.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21723679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.12e-51nuclear factor Y, subunit C11