PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G071000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 428aa    MW: 45641.7 Da    PI: 6.8291
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G071000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS250.18.5e-77384242374
                GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevs 88 
                         ++lLl+cA a++s+d +laq++++ l+++ +s++g +p+ Rl++ ++++L ar     s  ++a p ++       + ++a++l  +++++
  Brast08G071000.1.p  38 QQLLLHCAAALESKDVTLAQQAMWVLNNIvSSSHGdTPNSRLTSSLLRGLVARACV--SPGSSAGPGRSLW---AGKGMSATELaeYVDLT 123
                         699**************************878888789***************997..3333344444443...3444444444559**** PP

                GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg....skeeleetgerLakfAeelgv 174
                         P+++f++ + N aIl+a++g  ++H++D+++++++QWp+L+++L++R+ ++pp lRiT+  +  +      +     +g rLa+fA++ gv
  Brast08G071000.1.p 124 PWHRFGFTASNGAILRAAAGRPALHVVDLGVTHCMQWPTLIDELSKRAgGPPPALRITVPRARPKAppflAAPDEALLGARLANFARSRGV 214
                         ************************************************55667*****9988666689998889999************** PP

                GRAS 175 pfefnvl............vakrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                         +++f+v+              ++l+++  + e+L ++ gEal+Vn++  l ++       +++rd ++++v+ l+P +v+v++++ad++s+
  Brast08G071000.1.p 215 HLDFHVIdaknegqskprlQDDELASVlsDRESLGLRDGEALVVNCQSWLRHVA------PERRDGFVDAVRALKPCLVTVTDEDADLDSA 299
                         *******9998886555532224443366889999999************9998......77899************************** PP

                GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvva....cegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                         s++ r++ +le+++ lfd+l+a +pr+s  r+  E++ lg +i+ vva    c ga+  er e+ ++ +er+++ GF  v ++e++a+++k
  Brast08G071000.1.p 300 SLASRVAGCLEFHWILFDALDACAPRDSPRRAEQEAA-LGHKIEGVVAadgfCDGAAAAERSERGARLSERMRRRGFDGVGFGEEVAAEVK 389
                         *********************************9999.*********95555677899********************************* PP

                GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         +ll +++ +g+ v+ e++ lvl+Wk+++ v+++aW+
  Brast08G071000.1.p 390 RLLGEHA-NGWGVKREDDMLVLTWKGHAAVFTTAWT 424
                         *******.99*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.5211405IPR005202Transcription factor GRAS
PfamPF035142.9E-7438424IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MEQELRSGGP ALPRAHISSS SICFSGAAAA LAEGPRIQQL LLHCAAALES KDVTLAQQAM  60
WVLNNIVSSS HGDTPNSRLT SSLLRGLVAR ACVSPGSSAG PGRSLWAGKG MSATELAEYV  120
DLTPWHRFGF TASNGAILRA AAGRPALHVV DLGVTHCMQW PTLIDELSKR AGGPPPALRI  180
TVPRARPKAP PFLAAPDEAL LGARLANFAR SRGVHLDFHV IDAKNEGQSK PRLQDDELAS  240
VLSDRESLGL RDGEALVVNC QSWLRHVAPE RRDGFVDAVR ALKPCLVTVT DEDADLDSAS  300
LASRVAGCLE FHWILFDALD ACAPRDSPRR AEQEAALGHK IEGVVAADGF CDGAAAAERS  360
ERGARLSERM RRRGFDGVGF GEEVAAEVKR LLGEHANGWG VKREDDMLVL TWKGHAAVFT  420
TAWTPSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-434042690475Protein SHORT-ROOT
5b3h_B4e-444042636421Protein SHORT-ROOT
5b3h_E4e-444042636421Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G071000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566073.10.0scarecrow-like protein 32
TrEMBLI1HHY40.0I1HHY4_BRADI; Uncharacterized protein
STRINGBRADI2G20760.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122273238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.13e-82GRAS family protein