PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G069400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 432aa    MW: 46520.4 Da    PI: 5.1295
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G069400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM66.67e-21121441127
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk.....kvkaeek.ewyfFskrdkkyatgkrknratk..sg 81 
                         l pG+ F P+d+el++  L+ k+++++   + +++++++d+y ++P +L +     +++++e+  wyfF+  + k+++g+rk+r++    g
  Brast08G069400.1.p  12 LHPGISFTPEDDELITLCLRLKAAREPlpPPGAQFVHDADVYAADPANLVAgfppaSARTGESmVWYFFCYPKAKSTRGSRKSRTIGegGG 102
                         579***********************966555678**************64466664444444599******************8664578 PP

                 NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                         +W++  + k+v + +g +vg ++++      ++ gek+ W+m ey 
  Brast08G069400.1.p 103 TWHSEYR-KDVADGEGCVVGYRRSFSHE---TSGGEKSGWLMMEYG 144
                         9**8876.89999999*******99875...78899*********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-296165IPR003441NAC domain
PROSITE profilePS5100529.03112166IPR003441NAC domain
PfamPF023656.7E-1414143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MASPPHLPAA VLHPGISFTP EDDELITLCL RLKAAREPLP PPGAQFVHDA DVYAADPANL  60
VAGFPPASAR TGESMVWYFF CYPKAKSTRG SRKSRTIGEG GGTWHSEYRK DVADGEGCVV  120
GYRRSFSHET SGGEKSGWLM MEYGFCDDDN QENQEVSPVL CKVYQSTRQR RSAEKSSSSR  180
SALKRKAEDK ISDTGWSARS RRKLVFPSPS ATNPATPPTM GTATPEDLLH ETPALLMSAD  240
HTRSLLSCKS HGNNAILTPI ADESPPENSV LQPEATWTLD QSFFSPHHTG SEPSCHDTLL  300
PSAEITDGTF DQSFFSPHHT GSEPSCHDTL LPSAEISDAT FDQSFFSPHH TGSEPSCHDT  360
LLPSAGISDG TFDQSFFSPH HAGPSAEISD GMALLLPWAY GASPSCTPYA ETSLAPLGCG  420
AEWPYGLPFQ C*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G069400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLI1HHW61e-152I1HHW6_BRADI; Uncharacterized protein
STRINGBRADI2G20590.11e-153(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.17e-16NAC domain containing protein 96