PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G050400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 429aa    MW: 47912.6 Da    PI: 5.2416
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G050400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.36e-34161072102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k+ye++ed+++++++sw   g sfvv+d+ ef++++LpkyFkh+nf+SF+RQLn+YgF+k++ e+         weF ++ F +g+ +
  Brast08G050400.1.p  16 FLIKTYEMVEDPATSRVVSWGPGGASFVVWDPPEFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFGNEDFVRGHMH 97 
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k 
  Brast08G050400.1.p  98 LLKNIHRRKP 107
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.8E-6012105IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-3513105IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.5E-3813105IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.9E-3116105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-191639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-195466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MESSQSQGGG GGRPPFLIKT YEMVEDPATS RVVSWGPGGA SFVVWDPPEF SRDLLPKYFK  60
HNNFSSFIRQ LNTYGFRKID PERWEFGNED FVRGHMHLLK NIHRRKPVHS HSLQNQANGP  120
LAEAERRELE DEISRLRHEK SVLLADLQRQ AQQQCGINWQ MQSLEDRLMV MEQRQENVVA  180
SLRDILQRRM GAVSGSVLLE TDHFSKKRRV PRIDFFAQEP AVEEQRVPYL SAMVAAETPG  240
VLPPVTGLNA EPFEKMELAL VSLEKLFQRA GNYAPSEDVY NAAAAPSSAL ALGNLQAAPM  300
EGSTNVQPSA ELAEPLGYSQ SPVLPLAHIR EDTGKTMTGV DMNSEASTSS TSQDETTVET  360
RVSNEPSLSN DIFWERFLTE TPQSDGKREK HETKDDVKIG VDCNWSNHRG NVDQITEQMG  420
HLASAEKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-24810512120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G050400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:12032317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3623150.0AK362315.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2004D11.
GenBankKF2085460.0KF208546.1 Triticum aestivum heat shock factor A4c (HsfA4c) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024315365.10.0LOW QUALITY PROTEIN: heat stress transcription factor A-4d-like
SwissprotQ93VB51e-167HFA4D_ORYSJ; Heat stress transcription factor A-4d
TrEMBLA0A2K2D9820.0A0A2K2D982_BRADI; Uncharacterized protein
TrEMBLI1HHA60.0I1HHA6_BRADI; Uncharacterized protein
STRINGBRADI2G18980.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-72heat shock transcription factor A4A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Kojo K, et al.
    Regulatory mechanisms of ROI generation are affected by rice spl mutations.
    Plant Cell Physiol., 2006. 47(8): p. 1035-44
    [PMID:16816407]