PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G044900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 454aa    MW: 48886.8 Da    PI: 8.2299
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G044900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.3e-1672131155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  Brast08G044900.1.p  72 SRFRGVSRHRWTGRYEAHLWDkNSWNPtqrKKgKQVYLGAYDEEEAAARAYDLAALKYWG 131
                         789******************888855666447*************************98 PP
2AP255.11.9e-17174225155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++++grW+A+I   +   g +k+ +lg++gt eeAa+a++ a+ +++g
  Brast08G044900.1.p 174 SKYRGVARHHQNGRWEARIGRvF---G-NKYLYLGTYGTQEEAARAYDIAAIEYKG 225
                         89****************99966...3.6***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.8E-1272131IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-1672140IPR016177DNA-binding domain
PROSITE profilePS5103219.66473139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-1573140IPR001471AP2/ERF domain
SMARTSM003801.5E-2373145IPR001471AP2/ERF domain
PfamPF008472.4E-12174225IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-17174234IPR016177DNA-binding domain
CDDcd000185.90E-23174233No hitNo description
PROSITE profilePS5103218.769175233IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-17175233IPR001471AP2/ERF domain
SMARTSM003809.6E-26175239IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MDSVVMVKSE IESYVGSSSS LAAGTPSVGE AEAVVVRRRR REPLAAAALG PAGGGVGKPS  60
GALPGIAVKR SSRFRGVSRH RWTGRYEAHL WDKNSWNPTQ RKKGKQVYLG AYDEEEAAAR  120
AYDLAALKYW GATTYTNFPV MDYEKELKIM ESLTKEEYLA SLRRKSSGFS RGVSKYRGVA  180
RHHQNGRWEA RIGRVFGNKY LYLGTYGTQE EAARAYDIAA IEYKGVNAVT NFDLRSYITW  240
LKPPPPALAV NPDHPLLAMH PHAHSVEHEP FIPHMLPPLP LPPPTPALSR NPFVLDPDAA  300
MAHEAAAISP AGPSGGPLRR RDSTSSSSSS SSPTALGLLL KSTMFRQLVE RNDPDYSGAG  360
GLLKDHHHGV EAEQPAGAQA LLPGEGYEYR DFFHGASSDA CGLLFSSPSS GHGGVAAGFQ  420
GDAVAACYGE HEDGERMAAA RTWDGPFADM ASL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197105PTQRKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G044900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231106.10.0ethylene-responsive transcription factor WRI1
TrEMBLA0A3B6A1641e-169A0A3B6A164_WHEAT; Uncharacterized protein
TrEMBLM8BCP91e-169M8BCP9_AEGTA; Ethylene-responsive transcription factor WRI1
STRINGBRADI2G18570.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.12e-76ARIA-interacting double AP2 domain protein