PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast08G044400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WRKY | ||||||||
Protein Properties | Length: 223aa MW: 23275.7 Da PI: 7.1246 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.5 | 9e-31 | 135 | 192 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v++tYeg+H h Brast08G044400.1.p 135 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCSVKKRVERDRDDPSYVVTTYEGTHSH 192 59*******************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.8E-33 | 121 | 195 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.41E-28 | 127 | 195 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.215 | 130 | 195 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-34 | 135 | 194 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-24 | 136 | 192 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MAAVGAAPVL FYQQPALAAG DGAGCFFGPP SSPPMSSFFS SHGHGGSSST AGSSPASAFS 60 PALPAPPPPA AADPGQFDIS EYLFDDGIFA AVPPGAPAVA AHGGSAADQQ QQAAAVERPR 120 TERIAFRTRS EIEILDDGYK WRKYGKKSVK NSPNPRNYYR CSTEGCSVKK RVERDRDDPS 180 YVVTTYEGTH SHVSPSTVYY ASQDAASGRF FVAGTQPPGS LH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-25 | 125 | 196 | 7 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-25 | 125 | 196 | 7 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269|PubMed:21030507}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast08G044400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT837881 | 1e-145 | CT837881.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124O14, full insert sequence. | |||
GenBank | DQ298179 | 1e-145 | DQ298179.1 Oryza sativa WRKY transcription factor 7 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003568011.1 | 2e-96 | probable WRKY transcription factor 48 | ||||
Swissprot | Q93WU9 | 8e-41 | WRK51_ARATH; Probable WRKY transcription factor 51 | ||||
TrEMBL | I1HH54 | 5e-95 | I1HH54_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G18530.1 | 8e-96 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 5e-41 | WRKY DNA-binding protein 50 |
Link Out ? help Back to Top | |
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Phytozome | Brast08G044400.1.p |
Publications ? help Back to Top | |||
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