PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G017400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 379aa    MW: 40206.2 Da    PI: 9.4851
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G017400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_170.52.6e-22240302163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e++lkre+rkq+NRe+ArrsR+RK+ae+eeL++ v++L+aeN++L++e+++l+++++kl+ e+
  Brast08G017400.1.p 240 ERDLKREKRKQSNRESARRSRLRKQAETEELATQVESLTAENTSLRSEISKLTENSEKLRLEN 302
                         799********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.5E-31193IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1701.1E-17235299No hitNo description
PfamPF001701.4E-20240302IPR004827Basic-leucine zipper domain
SMARTSM003381.6E-22240304IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.403242305IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.88E-11243299No hitNo description
CDDcd147023.28E-23245293No hitNo description
PROSITE patternPS000360247262IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MAHDEAVVTH KTGKTASPPK DQPAPCPYPD WSAIQAYYGS GVLPPTYFAP AIAPGHAPPP  60
YMWGPQPLMP PPFGTPYAAM YPHGGAYPHP LVPMMANPLS VEPAKSASSK EKSSNKKLKE  120
IDGTAVSTGS GNSKKTTSSS EAYSGEGSSD VNDLKVSRTP RKRSMDGGLG TEATGAARNE  180
DVLLGNGAIL PNHLFPAPVI KPSVTNAANS GAMGKPISPP PGVIIPSYTV VSTELSTKDE  240
RDLKREKRKQ SNRESARRSR LRKQAETEEL ATQVESLTAE NTSLRSEISK LTENSEKLRL  300
ENSALAVKLK NTTTPTNTEM PVDKPAAAAS SSPRIVENFL SMIDDTSKSG VNNHTEHSER  360
KLRQLLGSSV TTDVVAAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256262RRSRLRK
2256263RRSRLRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G017400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567856.10.0common plant regulatory factor 1
TrEMBLI1HG840.0I1HG84_BRADI; Uncharacterized protein
STRINGBRADI2G15940.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27763888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01120.15e-22G-box binding factor 2