PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G002800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRF
Protein Properties Length: 258aa    MW: 27712.8 Da    PI: 4.4794
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G002800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC70.91.6e-22167210245
                 WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          epgrCrRtDGKkWRC+r++++++k+CErH+hrgr+r  + ++e
  Brast08G002800.1.p 167 LEPGRCRRTDGKKWRCWRKTIPNEKYCERHMHRGRKRPVQLVVE 210
                         59***********************************9998875 PP
2QLQ54.24.4e-19100135237
                 QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                         +FTa+Qlq+L++Q  +y+y+aa++PvP +L+++i+k
  Brast08G002800.1.p 100 SFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 135
                         8*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.7E-899135IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.018100135IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.0E-12100134IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166721.964166210IPR014977WRC domain
PfamPF088794.3E-19168205IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MAAEGEAKDT NPPVGGVGGE STTLEEEVMH EAGGGQEPEE EDAGREDKYG DAGGECKDLV  60
LVEEDPVVLL EDPEEAAATE ALQEEMRALV ASVPEGAGAS FTAMQLQELE QQSRVYQYMA  120
ARVPVPTHLV FPIWKSVTGA SSEGAQNYPT LMGLATLCLD FGKSPELEPG RCRRTDGKKW  180
RCWRKTIPNE KYCERHMHRG RKRPVQLVVE DDEPDSASGS KSSSGKVAEG GKKTDEKSPS  240
SKKLAVAAPA TVESLHD*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269|PubMed:24854713}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G002800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2494580.0AK249458.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf29g18, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567781.11e-162growth-regulating factor 11
SwissprotA5HEG91e-130GRF10_MAIZE; GRF-interacting factor 10
TrEMBLI1HFR51e-161I1HFR5_BRADI; Uncharacterized protein
STRINGBRADI2G14320.11e-161(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67353152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.17e-29growth-regulating factor 5
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]
  3. Zhang D, et al.
    GRF-interacting factor1 Regulates Shoot Architecture and Meristem Determinacy in Maize.
    Plant Cell, 2018. 30(2): p. 360-374
    [PMID:29437990]