PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast08G000900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C3H | ||||||||
Protein Properties | Length: 1549aa MW: 170201 Da PI: 4.4429 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.1 | 1.3e-07 | 987 | 1008 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ ++ G C++G +C+F+H+ Brast08G000900.2.p 987 NCPSYMSKGSCSFGLSCHFNHP 1008 7********************8 PP | |||||||
2 | zf-CCCH | 31.6 | 2.8e-10 | 1046 | 1069 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C +++r+G C+yG rC+F+H++ Brast08G000900.2.p 1046 RNCVYYMRNGACRYGKRCHFNHPE 1069 78********************96 PP | |||||||
3 | zf-CCCH | 29.8 | 1e-09 | 1304 | 1330 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++ +Ck+G+ C+F H++ Brast08G000900.2.p 1304 PGEPECPFYMKHRYCKFGSHCNFDHPK 1330 5799*********************96 PP | |||||||
4 | zf-CCCH | 20.9 | 6.4e-07 | 1373 | 1399 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ Cr+++++G Cky + C F+H++ Brast08G000900.2.p 1373 PGQPDCRYYMQFGKCKYLSACIFHHPK 1399 5789*********************96 PP | |||||||
5 | zf-CCCH | 17.1 | 9.7e-06 | 1449 | 1464 | 8 | 23 |
GGGGTS--TTTTT-SS CS zf-CCCH 8 ffartGtCkyGdrCkF 23 f+++tG C++G C F Brast08G000900.2.p 1449 FYMKTGKCQFGLACEF 1464 9*************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.049 | 982 | 1009 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.127 | 982 | 1010 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.2E-6 | 987 | 1008 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.554 | 1042 | 1070 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-6 | 1042 | 1069 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.16E-6 | 1045 | 1070 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-7 | 1046 | 1069 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-4 | 1048 | 1070 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.072 | 1252 | 1279 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.192 | 1252 | 1280 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.015 | 1303 | 1330 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.558 | 1303 | 1331 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-7 | 1305 | 1330 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0066 | 1372 | 1399 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.516 | 1372 | 1400 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 52 | 1445 | 1468 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.549 | 1448 | 1469 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 8.878 | 1507 | 1535 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.9 | 1507 | 1534 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1549 aa Download sequence Send to blast |
MIGGGGGAAD EEDQAAATRT PPSSPSPPTI VPASSPHGLG RRLLGSLIRG IGPSSPPPSP 60 VPKVGLSLLL HLKPNPSTNP PPPPPRHHPP PSSSDRHPTQ PAAAELLAAK GLLHLAVDPK 120 HSCGPRKLTD QGTAAGELGA AENHAVAVPE DRDQALLDDQ EAAVHTQGGP AITVVNPSAT 180 DTSAATQGEE TPVEEQDKLA PHQEQQQDTC PTWDGNAAEC QEEVVGQGFT DEHSAFKDGV 240 AGDGQDKVLQ HCSGDQLGAT RGDQEVVVVV EQDETTHGIS VENQGKEDRC TARDDAVEDQ 300 EAVEQDAMDQ RCKRTDGVAV KDQEEALEQC ATYELQTTEN DDAKDDEQDV VEPGVVHGGV 360 ATTENVAVRD HEVVVLQTVT DEMCAAMDDI AVENQEKDVE KCIAFDLGMT KNDDVVDEPS 420 RVTDGENLVV QEKDKLVAID KQDIFSDGNG LGYLDEEVLV VIDQQSTLKD VQEKVLQQCT 480 TSDQLGATRD DQEGLKQTDE TTYDIAVENQ ERVEWHTAQD DIVEDQEVVE QDAIDQRGES 540 IDAIAVKDQE KAVEQCPTYE FGTTENDDAK DYQKVVEQGV IDKGGATMDD TAINHQEEAV 600 EQCVTYEGTT RNDDANAEQE VVEQGIIDEE GPTMDDIAVK DHEVVVQSVI GMRASIDNSV 660 VENQGKELEQ CTTYHLGTTE SDDVVDSQEV AEQGVVNEGG STMEDNALKD HEVVEQSIID 720 GMRAATDDIA VEDQEQVPEQ CAVNESRAPM DEYTVGEKEK VVEQGVTSKQ GAMNMDVAVK 780 DQEKVMKQGV IDNHGTVPID DIVVTDGVKA VGQFVSGASI TSKDENPVEE HNTARNQGVI 840 DENGRTKDDI DVEEHVITDK WATTSDGTAL EDQRNESELC ISNEHITSKD VVAVYIQGDV 900 LEQRVGDEQG ATKFTVEKNN DVQERVCHEW GATEDDLVMD TTASEGISGI SSSQSVSVTV 960 NGSAGGIWKK EKVKFCVKYP QRPGKLNCPS YMSKGSCSFG LSCHFNHPSL KAKPDVSWFP 1020 SEQDSHGVAG NLELNRVGLP IREGARNCVY YMRNGACRYG KRCHFNHPEH VIDAQFSAPT 1080 GWEDASPSSR HLEKYSNDAT LDDTSYSKKS FEHATFDDTA QLRKSPEGAT LDDTAHLKKS 1140 PEGATLDDTS YSKRSFDHAT LDEKSSSSKV LPANILRMLL PPQKVPPSIE RKVMKVKKSS 1200 NWSSTSDDSD GCCSADSPDG PLCKQEHVDY PERPGRLDGP LYKQEHVDYS ERPQKPECPF 1260 IKRFGDCKFA SSCKYHHSKG RHPSRYHRKD PSLGGEVLEY PTRPGEPECP FYMKHRYCKF 1320 GSHCNFDHPK DLNPTTDSPA NEKKSVASSD HHASTRITLK DPALQQQQYP ERPGQPDCRY 1380 YMQFGKCKYL SACIFHHPKD RLPSGWHPSD PAQSDQYDTC QPTNTTRIEN FCQQAQIGAE 1440 IHGMPELPFY MKTGKCQFGL ACEFRYPKDT RSTTEETFGH RTDLAYDKFT RSENIVHQEE 1500 HAMNPERPGE PEGSYYMKHG YCNFQMNCKF HHPGDRLCNK PVCNRHKV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast08G000900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010230944.2 | 0.0 | uncharacterized protein LOC100842536 | ||||
Refseq | XP_014753624.1 | 0.0 | uncharacterized protein LOC100842536 | ||||
Refseq | XP_014753625.1 | 0.0 | uncharacterized protein LOC100842536 | ||||
TrEMBL | A0A2K2D8J6 | 0.0 | A0A2K2D8J6_BRADI; Uncharacterized protein | ||||
STRING | MLOC_56050.2 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16540.3 | 1e-35 | zinc finger nuclease 3 |
Link Out ? help Back to Top | |
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Phytozome | Brast08G000900.2.p |