PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G222700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 468aa    MW: 50795.6 Da    PI: 6.3238
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G222700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2452.7e-14134193155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ ++ Aa+a++ a++k++g
  Brast07G222700.1.p 134 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDRAARAYDLAALKYWG 193
                         57*******************666664477446**********99*************98 PP
2AP247.44.7e-15236287155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Brast07G222700.1.p 236 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 287
                         57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-17134203IPR016177DNA-binding domain
PfamPF008471.6E-11134193IPR001471AP2/ERF domain
CDDcd000181.30E-19134203No hitNo description
SMARTSM003801.6E-27135207IPR001471AP2/ERF domain
PROSITE profilePS5103218.848135201IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-15135202IPR001471AP2/ERF domain
PRINTSPR003671.8E-6136147IPR001471AP2/ERF domain
CDDcd000182.38E-23236297No hitNo description
SuperFamilySSF541716.21E-18236297IPR016177DNA-binding domain
PfamPF008475.8E-10236287IPR001471AP2/ERF domain
PROSITE profilePS5103219.045237295IPR001471AP2/ERF domain
SMARTSM003801.5E-33237301IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-18237296IPR001471AP2/ERF domain
PRINTSPR003671.8E-6277297IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MDMDMSSTTT HPHHWLSFSL SNNYHHGLLE ALSSSSSAHQ LGDQEGITVD ETPKMEDFLG  60
GVGSAAGTAA VVDQLGCGEL GSIAAGFLHR YPAAPGMAEN HGAVTVAAAA AATTDLMESD  120
QARRPAETFG QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE GQSRKGRQVY LGGYDKEDRA  180
ARAYDLAALK YWGPTTTTNF PVSNYETELE EMQSMTRQEF IASLRRKSSG FSRGASIYRG  240
VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGLNA VTNFDMSRYD  300
VESILSSDLP VGGGAAARAS KFQTDPSLPP QNACVVSPDV LPPLEKDYWS QLALHYQQQQ  360
HQQQQHQQQF HASAFQTYGS GVNVDFTMGT SSHSSSNGGA MWGATGQQDD GNRQSNSYSS  420
DIPYAAAAAM VSGSAAGFEG STGNNGTWVT SNPSTAPQFY NYLFGME*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G222700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1019590.0AK101959.1 Oryza sativa Japonica Group cDNA clone:J033075O07, full insert sequence.
GenBankHQ8588430.0HQ858843.1 Oryza sativa Japonica Group isolate UT1531 AP2-EREBP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563348.30.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-130AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLI1GVQ30.0I1GVQ3_BRADI; Uncharacterized protein
STRINGBRADI1G31337.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-112AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]