PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast07G218200.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 297aa MW: 31699.4 Da PI: 6.6212

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast07G218200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.8	5.7e-14	131	183	3	55
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 + kr rr+ +NRe+ArrsR+RK a++ Le v++L++e +L k+l e +++ Brast07G218200.1.p 131 DTKRIRRMVSNRESARRSRRRKHAQLTDLELQVEQLKSESASLFKQLTEANQH 183 579****************************************9888777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.7E-14	129	193	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.634	131	182	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.6E-11	132	183	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.45E-10	133	184	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.2E-11	133	183	No hit	No description
PROSITE pattern	PS00036	0	136	151	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MKKCASELEL EAFIRQHLAS AAANRPSQGT DAGAGVFSSH VGGLPVPGLC FGDSQNALEL 60 EGSDAGHLWW SDGVCAPHPA ASSTMGSQTA AASAGHTETT SGNQALESES DSGTESLIDI 120 EGGRCNRKST DTKRIRRMVS NRESARRSRR RKHAQLTDLE LQVEQLKSES ASLFKQLTEA 180 NQHFTTAVTD NRILKSDVET LRVKVKMAED MVARTAMSCG VGQLGLAPFL NSRKMCQALD 240 VLTATGLDLP GNRALFKDLT PSRQVQTSTV QSTASLESLD NRMSSEVTSC AGDMWP*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). May function as a negative regulator in cold and drought stress responses (PubMed:22189955). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:22189955}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast07G218200.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by cold stress in roots. {ECO:0000269\|PubMed:22189955}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010240308.1	1e-175	bZIP transcription factor RISBZ5 isoform X1
Swissprot	Q654B3	2e-85	RSBZ5_ORYSJ; bZIP transcription factor RISBZ5
TrEMBL	I1GVU4	1e-173	I1GVU4_BRADI; Uncharacterized protein
STRING	BRADI1G31700.1	1e-174	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2095	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	1e-29	basic leucine zipper 9

Link Out ? help Back to Top
Phytozome	Brast07G218200.1.p

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Liu C,Wu Y,Wang X bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice. Planta, 2012. 235(6): p. 1157-69 [PMID:22189955]