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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast07G213300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 222aa MW: 25294 Da PI: 4.5629 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.1 | 2e-22 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri+n r tf+kRr+g+lKKA+EL vLCda vi+fss+g+l++y+s Brast07G213300.1.p 9 KRIDNVASRGATFCKRRAGLLKKAHELAVLCDAHLGVIVFSSSGNLFDYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 59 | 2.1e-20 | 73 | 171 | 3 | 99 |
K-box 3 kssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslk.eLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 +ss+++ +++ + +++ e++ L++e + L+ ++R+ GedL+sL + eL L+qqLe+ l+k+R++ +ell+eq+ee+++k + l+++n Brast07G213300.1.p 73 SSSTSRsTNDIQLQEMPAEIESLRQERDHLEASLRRQTGEDLSSLATEeELDDLQQQLESVLRKVRQRTDELLTEQLEESRHKVDILEDQN 163 444454589999*********************************98537***************************************** PP K-box 92 kaLrkkle 99 + Lr+ ++ Brast07G213300.1.p 164 NFLRHTMN 171 ****9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 27.81 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.5E-33 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.2E-25 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.70E-36 | 2 | 80 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-20 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.6E-19 | 82 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.752 | 85 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MGRGRVEMKR IDNVASRGAT FCKRRAGLLK KAHELAVLCD AHLGVIVFSS SGNLFDYCSP 60 HTSWSELIER YESSSTSRST NDIQLQEMPA EIESLRQERD HLEASLRRQT GEDLSSLATE 120 EELDDLQQQL ESVLRKVRQR TDELLTEQLE ESRHKVDILE DQNNFLRHTM NEEDMELQHA 180 AVESEGTLFG GFFPEVEEER GALTSLQLWP ELTQPSSLHD H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-15 | 1 | 83 | 1 | 84 | MEF2 CHIMERA |
6byy_B | 3e-15 | 1 | 83 | 1 | 84 | MEF2 CHIMERA |
6byy_C | 3e-15 | 1 | 83 | 1 | 84 | MEF2 CHIMERA |
6byy_D | 3e-15 | 1 | 83 | 1 | 84 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast07G213300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF469312 | 0.0 | KF469312.1 Brachypodium distachyon MADS-box transcription factor 17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014758000.1 | 1e-120 | MADS-box protein ZMM17-like isoform X1 | ||||
Swissprot | Q655V4 | 2e-54 | MAD30_ORYSJ; MADS-box transcription factor 30 | ||||
TrEMBL | I1GW01 | 1e-94 | I1GW01_BRADI; MADS-box transcription factor 17 | ||||
STRING | BRADI1G32210.1 | 2e-95 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19518 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 1e-34 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast07G213300.1.p |