PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G208400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 907aa    MW: 100281 Da    PI: 6.0841
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G208400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.18.4e-24135236199
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+lt sd++++g +++p++ ae+        ++++  ++l  +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   
  Brast07G208400.1.p 135 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfTLQPPA-QELFAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI-- 222
                         99*****************************9666655.49************************************************.. PP

                         SSSEE..EEEEE-S CS
                  B3  86 grsefelvvkvfrk 99 
                         ++++ +l+++++r+
  Brast07G208400.1.p 223 WNDSNQLLLGIRRA 236
                         7878889***9997 PP
2Auxin_resp116.72e-38261344183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaast+s F+++YnPras+ eFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdld vrWpnS+Wrs+k
  Brast07G208400.1.p 261 AAHAASTNSRFTIFYNPRASPCEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDAVRWPNSHWRSVK 344
                         79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-47120264IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-41127250IPR015300DNA-binding pseudobarrel domain
CDDcd100178.78E-22134235No hitNo description
PROSITE profilePS5086312.943135237IPR003340B3 DNA binding domain
PfamPF023621.8E-22135236IPR003340B3 DNA binding domain
SMARTSM010196.6E-24135237IPR003340B3 DNA binding domain
PfamPF065071.6E-33261344IPR010525Auxin response factor
PfamPF023093.3E-8767860IPR033389AUX/IAA domain
SuperFamilySSF542772.29E-7768848No hitNo description
PROSITE profilePS5174523.127774858IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 907 aa     Download sequence    Send to blast
MRLSSPAGSV LSGQAAASPE DVEEHKCLNS ELWHACAGPL VSLPAVGSRV VYFPQGHSEQ  60
VAASTNKEIE SQIPNYPNLP PQLICQLHNV TMNADPETDE VYAQMTLQPL NPQELKDPYL  120
PAELGTANKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAEKV FPPLDFTLQP PAQELFAKDL  180
HGNEWKFRHI FRGQPKRHLL TTGWSVFVSA KRLVAGDSVL FIWNDSNQLL LGIRRATRPQ  240
TVMPSSVLSS DSMHIGLLAA AAHAASTNSR FTIFYNPRAS PCEFVIPLAK YVKAVYHTRI  300
SVGMRFRMLF ETEESSVRRY MGTITGISDL DAVRWPNSHW RSVKVGWDES TAGERQPRVS  360
LWEIEPLTTF PMYPTPFPLR LKRPWPTGLP SLHGGKDDDL TSSLMWLRDG ANPGFQSLNF  420
GGVGMSPWMQ PRLDASLLGL QPDIYQTIAA NAFQDPTKMS PTMLQFQQPQ NMVGRAMPLL  480
QSQILQQVQP QFQQQPYLQN INGATIQGQA QSEFLQQQLQ RCQSFNEQKP QIQHQQEPHQ  540
QQHSQSMQVP QHQHMQQQKN MANYQSSFSQ LSSAPQSSPT TLQPVVPFSQ PQSFSDTNMS  600
SLSPSSASGM HNTLGPFSSE AASHLGMPRP TAIPVPDPWS SKRVAVDSLL TSRPQATSSI  660
EQLDSTPPSI PESSALAPLP GRGCLVDQDG NSDPQNHLLF GVNIDSQSLL MQGGIPSLHD  720
ENDSTTIPYS TSNFLSPSQN DFSLDQTLNS PDCLDESGYV PCSHNPDQAN QPPATFVKVY  780
KSGTYGRSLD ITRFSSYHEL RRELGRLFGL EGQLEDPLRS GWQLVFVDRE EDVLLVGDDP  840
WQEFVNSVFC IKILSPQEVQ QMGKQGLELL SSAPSKRLGS SCDDYASRQE SRSLSTGIAS  900
VGSVEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1572836551388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G208400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563403.10.0auxin response factor 17 isoform X1
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLI1GW400.0I1GW40_BRADI; Auxin response factor
STRINGBRADI1G32547.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]