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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Brast07G187500.2.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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| Family |
C3H |
| Protein Properties |
Length: 392aa MW: 42395.7 Da PI: 8.5753 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Brast07G187500.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 34.8 | 2.8e-11 | 5 | 26 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25
+elCr+f+r G CkyG++C+F H
Brast07G187500.2.p 5 QELCRNFQR-GSCKYGAQCRFVH 26
79*******.************* PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 392 aa
Download sequence Send
to blast |
MNRRQELCRN FQRGSCKYGA QCRFVHASSN QQQQQAKPNP FGFGTSSRQQ QQPFGTQSQQ 60
QQQPNPFGFG VQAAAAQSRN APGPAKPFQN KWVRDASAPT KQPEAQPAPQ AAHTSCTDPE 120
SCKQQISDDF KNETPLWKLT CYAHLRSGPC DIAGDVSYEE LRAKAYEEGK QGHPLQSIIE 180
GERNLQNAKL MEFTNLLNNA CPSQTPSFPT VGSFPAVKNT SSFGGSQTNG PPVFSSFSQI 240
GAAANFGSGI RTATPGVPAN ALFGQSTQPT FGQSTQTTFG QSTQSTFGSG GMKFGVPDAS 300
QTSRQPFGTL QGSSMSSNSN FPKSPSSSVQ QRDIDRQSME LLNGMTARTS AMNQAPVENE 360
SKDDSIWLKE KWAIGEIPLD EPPQRHISHV F*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that binds double-stranded DNA and the single-stranded RNA polymers poly(rA), poly(rU) and poly(rG), but not poly(rC). Mediates optimal plant architecture through brassinosteroid (BR) signaling. May act as a negative regulator in sterol homeostasis (PubMed:18953406). Acts as negative regulator of BR signaling. Binds to the specific DNA sequence 5'-CTCGC-3' of BZR1 promoter and negatively regulates BZR1. Acts as an antagonistic transcription factor of BZR1 to attenuate the BR signaling pathway and regulate leaf bending. Represses the expression of ILI1, and activates that of IBH1 to balance the regulation activity of BZR1 (PubMed:22570626). {ECO:0000269|PubMed:18953406, ECO:0000269|PubMed:22570626}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by 24-epibrassinolide. {ECO:0000269|PubMed:18953406, ECO:0000269|PubMed:22570626}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FP093980 | 0.0 | FP093980.1 Phyllostachys edulis cDNA clone: bphylf053n08, full insert sequence. |
