PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G180300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family DBB
Protein Properties Length: 282aa    MW: 29964.6 Da    PI: 5.5668
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G180300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.31e-05444539
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                         C+ ++ ++++  C  ++  lC  C    H+       H++
  Brast07G180300.1.p  4 QCDVCGVEPATVLCCADEAALCSACNRRVHRAnklagkHRR 44
                        7***************************9*76777777775 PP
2zf-B_box23.89.5e-0861100437
            zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                         + C+ ++e + + fC +++  lC+ C + +H+       H
  Brast07G180300.1.p  61 PLCDVCKERRGIVFCVEDRAILCAGCDEPIHSAndltakH 100
                         78*****************************655566555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.1E-7147IPR000315B-box-type zinc finger
PROSITE profilePS501199.513147IPR000315B-box-type zinc finger
CDDcd000219.17E-5347No hitNo description
PROSITE profilePS501199.11558105IPR000315B-box-type zinc finger
SMARTSM003365.8E-1558105IPR000315B-box-type zinc finger
CDDcd000212.38E-661105No hitNo description
PfamPF006432.7E-561101IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MRVQCDVCGV EPATVLCCAD EAALCSACNR RVHRANKLAG KHRRLALQQP SSPTNDAAAG  60
PLCDVCKERR GIVFCVEDRA ILCAGCDEPI HSANDLTAKH SRFLLVGAKL SAAELADHQD  120
HQIPSPDCSS DAHANSSPSP AEDAVLNGAG GGGGTGSSIS DYLTNICPGW RVEDLLLDDA  180
AFASKQKGRD EQVPFLDADL FDVVAAGEKR GGAWAQAPRV PQPAWASLEE VVPAPKQAKQ  240
QQQGHVREWY HSDSDSDVFA VPEISPTPPA KRARPSPFWC L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G180300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3632771e-123AK363277.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013O17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563555.11e-171B-box zinc finger protein 20
TrEMBLI1GWZ61e-169I1GWZ6_BRADI; Uncharacterized protein
STRINGBRADI1G35030.11e-170(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121002430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.11e-44salt tolerance homolog2