PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast07G168900.2.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 285aa MW: 30187.9 Da PI: 9.5957

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast07G168900.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.5	5.5e-09	140	187	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++e L+el+P + sk a +L + +++++sLq Brast07G168900.2.p 140 SHSLAERARREKINARMELLKELVPGC----SKVSGTALVLDEIINHVQSLQ 187 8*************************9....333557888888888888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.02E-9	134	191	No hit	No description
SuperFamily	SSF47459	1.3E-13	134	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.627	136	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.8E-13	136	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-6	140	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.2E-9	142	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MRHRSPPPAA GGEIQALAPA SAAGSSSSTT TTTGGGGGSF TALLGLPMSQ AMELLLPPSA 60 PPPTFPSDPS LVDRAARFSA FASPSPPTPP AKRKADPADR ASKGKKGRTT AGGDEKDAVG 120 EDGKPAYVHV RARRGQATDS HSLAERARRE KINARMELLK ELVPGCSKVS GTALVLDEII 180 NHVQSLQRQV ECGRITGLNC KSGMDLEQVT WPDMGVHGAR HLMQLQQQFW HGDLAHPHQP 240 PSQWEKRGDV HPPVFSNSSS SLFGYDLTSS GQQQPQTSKL KTEL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast07G168900.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP095332	2e-93	FP095332.1 Phyllostachys edulis cDNA clone: bphyem123o05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010227502.2	1e-138	transcription factor bHLH48
Swissprot	Q8VZ02	5e-50	BH048_ARATH; Transcription factor bHLH48
TrEMBL	I1GXA9	1e-137	I1GXA9_BRADI; Uncharacterized protein
STRING	BRADI1G35990.1	1e-138	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42300.1	1e-39	bHLH family protein

Link Out ? help Back to Top
Phytozome	Brast07G168900.2.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]