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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Brast07G166900.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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| Family |
GRAS |
| Protein Properties |
Length: 494aa MW: 52030.9 Da PI: 6.7436 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Brast07G166900.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 289 | 1.3e-88 | 110 | 492 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPil 91
+el+l+cA ++ gd ++a+++ l +sp+gd+ Rla +f++ALa r ++ +pp + +++ s + +f+++ P+l
Brast07G166900.1.p 110 RELVLACAGLLQRGDPAAARRAADILLSASSPRGDAADRLAYHFARALALRADA----MSGRVPPFAFPSSGsSGGGPGPYLAFNQIAPFL 196
6899***********************************************999....6667777777655524445566777******** PP
GRAS 92 kfshltaNqaIleav.egeervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
+f+hltaNqaIl+ v +g++rvHi+D+d+ +GlQWp+LlqaLa+R+ gpp++RiTg g+ ++++l +t+ rL+ fA+++++pf
Brast07G166900.1.p 197 RFAHLTANQAILDGVpAGARRVHILDLDAAHGLQWPPLLQALADRAdpalgLGPPEVRITGAGP----DRDALLRTAARLRAFARSIRLPF 283
*************984577***************************5555445***********....9********************** PP
GRAS 177 efnvl.......vakrledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF...... 253
+f++l ++ ++ + ++L +++p+E+laVn+vl lh+l + +l+ ++Lk v+ +sP vv+v+e+e++ ++sF
Brast07G166900.1.p 284 HFSPLllsssssQGSEGSSQQQQQLvELRPEETLAVNCVLFLHKLGGGQEELA----AFLKWVRAMSPAVVTVAERESSSAASSFdpaaaa 370
*****7665443222333335555549999***************95555555....5**********************99988444333 PP
GRAS 254 ..lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
+ + a+++y+a+f++lea++p+ s+er vE+ +lgrei+ +v + r e+W ++ ++aGF + pls +a++qa+lllr
Brast07G166900.1.p 371 mgTATIDAAMDHYAAVFEALEATVPPGSRERLAVEQDVLGREIEAAVLSGAGP-TWRGGGIERWAAAARAAGFAARPLSPFAVSQARLLLR 460
334567789************************************99877666.89*********************************** PP
GRAS 343 kvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
++ s+gy v+e +g+ +lgW++rpL+svS+W
Brast07G166900.1.p 461 LHYpSEGYLVQEARGACFLGWQTRPLLSVSSW 492
******************************** PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 494 aa
Download sequence Send
to blast |
MHMTLLEGND EVQVDAMMGF LIWGLRHSIQ SWAINEDPTK GQNMRWLETW ACPLASGERR 60
SIDMLSSLRS SSSSSDTDNN NNSGGGGGVE AAAVQGGGIG RAPPPPPSAR ELVLACAGLL 120
QRGDPAAARR AADILLSASS PRGDAADRLA YHFARALALR ADAMSGRVPP FAFPSSGSSG 180
GGPGPYLAFN QIAPFLRFAH LTANQAILDG VPAGARRVHI LDLDAAHGLQ WPPLLQALAD 240
RADPALGLGP PEVRITGAGP DRDALLRTAA RLRAFARSIR LPFHFSPLLL SSSSSQGSEG 300
SSQQQQQLVE LRPEETLAVN CVLFLHKLGG GQEELAAFLK WVRAMSPAVV TVAERESSSA 360
ASSFDPAAAA MGTATIDAAM DHYAAVFEAL EATVPPGSRE RLAVEQDVLG REIEAAVLSG 420
AGPTWRGGGI ERWAAAARAA GFAARPLSPF AVSQARLLLR LHYPSEGYLV QEARGACFLG 480
WQTRPLLSVS SWH*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}. |
| Publications
? help Back to Top |
- Li X, et al.
Control of tillering in rice.
Nature, 2003. 422(6932): p. 618-21
[PMID:12687001] - Sun F, et al.
Identification and functional analysis of the MOC1 interacting protein 1.
J Genet Genomics, 2010. 37(1): p. 69-77
[PMID:20171579] - Sanyal A, et al.
Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
Mol. Biol. Evol., 2010. 27(11): p. 2487-506
[PMID:20522726] - Yan WH, et al.
A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
Mol Plant, 2011. 4(2): p. 319-30
[PMID:21148627] - Xu C, et al.
Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
Nat Commun, 2012. 3: p. 750
[PMID:22434193] - Lin Q, et al.
Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
Nat Commun, 2012. 3: p. 752
[PMID:22434195] - Liang WH,Shang F,Lin QT,Lou C,Zhang J
Tillering and panicle branching genes in rice.
Gene, 2014. 537(1): p. 1-5
[PMID:24345551] - Zhang B, et al.
Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
Sci Rep, 2015. 5: p. 12211
[PMID:26197925]
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