PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G145000.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 479aa    MW: 52278.6 Da    PI: 7.247
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G145000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.31.3e-31552331128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....lelee.............vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkr 73 
                         lp+G++F+Ptd+el+ e+L++kv++      +   e             +i+   +i++++P++Lp  v+++  + +fF++ +k+y+tg+r
  Brast07G145000.2.p  55 LPAGVKFDPTDQELI-EHLEAKVQSGGaaaaV---EaaeshplidefipTIEGEdGICYTHPEKLP-GVSKDGLSRHFFHRPSKAYTTGTR 140
                         799************.99******99966551...134566666676555776646**********.556667799*************** PP

                 NAM  74 knra.....................................tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmhe 125
                         k+r+                                      ++ +W++tgk+++v + +g++ g+kk+Lv+y   g+++k+ekt+Wvmh+
  Brast07G145000.2.p 141 KRRKiqppaatavdasaaisssaatgasscsshqqqqqqqmRSETRWHKTGKTRPVAV-GGRQRGCKKILVLYtnFGKHRKPEKTNWVMHQ 230
                         ***88*******************************9998756889************.99************5547999999******** PP

                 NAM 126 yrl 128
                         y+l
  Brast07G145000.2.p 231 YHL 233
                         *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-3449145IPR003441NAC domain
PROSITE profilePS5100526.34855252IPR003441NAC domain
PfamPF023655.6E-1556233IPR003441NAC domain
SuperFamilySSF1019412.35E-34183252IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MDGRAADARE AGASGGGCGH PIGSRIEEHR KYMSESSCCP RCGHKIDRKL DWVGLPAGVK  60
FDPTDQELIE HLEAKVQSGG AAAAVEAAES HPLIDEFIPT IEGEDGICYT HPEKLPGVSK  120
DGLSRHFFHR PSKAYTTGTR KRRKIQPPAA TAVDASAAIS SSAATGASSC SSHQQQQQQQ  180
MRSETRWHKT GKTRPVAVGG RQRGCKKILV LYTNFGKHRK PEKTNWVMHQ YHLGESEEER  240
EGELVVSKIF YQTQPRQCGA TDASVERRSR DRAAAAPQMQ ASSDVMTIAA FPGHGGAGGI  300
DEFSFEQFRS SFDEVGTGDH QVAQARADEG VLHRHQQQHQ HQVGEHDHRR RHQLHYTGVL  360
LQEQQQRAAA VAACHVSTPT DPISTLIAAP PQVHQGSFVL AAPADQPYDH GAPSYHQQED  420
ERPHQTPKFD GRSTSGLEEV IMGCTSRRSK GGESSGGKEG AGWQYPSFWP SDNQDHHG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G145000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126142e-94CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227603.10.0NAC domain-containing protein 75
SwissprotQ9M0F81e-106NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A0Q3H5480.0A0A0Q3H548_BRADI; Uncharacterized protein
STRINGORUFI06G19520.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.13e-92NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]