PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G142400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 265aa    MW: 27818 Da    PI: 4.7728
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G142400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-175197252
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                         y+GV+ +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++ 
  Brast07G142400.1.p 51 TYRGVWMRV-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDAAALV 97
                        69***9888.**********843...6*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.50951108IPR001471AP2/ERF domain
SMARTSM003804.4E-3351114IPR001471AP2/ERF domain
PfamPF008471.9E-115197IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2951109IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-2051108IPR016177DNA-binding domain
CDDcd000188.00E-1752110No hitNo description
PRINTSPR003671.2E-85263IPR001471AP2/ERF domain
PRINTSPR003671.2E-87490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAPEYYEATS PASSSASPPP WPAGGSRGGS REKRGRRSGR ANNGAGGRHP TYRGVWMRVW  60
GKWVSEIREP RKKSRIWLGT FATPEMAARA HDAAALVVKG PAAVLNFPEL SASLPRPASA  120
APRDVQVTAA RAAAVDDDPA PMPAASRSPV CHDPGPSSSM LGHVDDEQLE EIIDLPCMGD  180
DDDTAAEIVF GAPFFRDPVA DEPWYEYEPA AWLEPDHYAG NGIGAHDGEL AMSGLGSGDR  240
AVSVLGADGC GIVASGFGAL LWNM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1744108772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G142400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1084734e-45AK108473.1 Oryza sativa Japonica Group cDNA clone:002-143-E08, full insert sequence.
GenBankAL6630004e-45AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence.
GenBankAP0149604e-45AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAY2582824e-45AY258282.1 Oryza sativa (japonica cultivar-group) CR251 transcription factor gene, complete cds.
GenBankCP0126124e-45CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560670.21e-110dehydration-responsive element-binding protein 3
TrEMBLA0A0Q3L4E51e-108A0A0Q3L4E5_BRADI; Uncharacterized protein
STRINGBRADI1G38110.11e-109(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.17e-25ERF family protein