PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G140700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 283aa    MW: 30137.5 Da    PI: 8.4996
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G140700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-183787155
                 AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        +++ GVr+++ +grWvAeI+d       +  r++lg+f tae+Aa+a+++a+  l+g
  Brast07G140700.1.p 37 CKFVGVRQRP-SGRWVAEIKDtT-----HkIRVWLGTFETAEDAARAYDEAACLLRG 87
                        799*******.7*********33.....35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.0E-133787IPR001471AP2/ERF domain
CDDcd000183.02E-303797No hitNo description
Gene3DG3DSA:3.30.730.104.7E-283895IPR001471AP2/ERF domain
PROSITE profilePS5103219.773895IPR001471AP2/ERF domain
SMARTSM003808.0E-3538101IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-193895IPR016177DNA-binding domain
PRINTSPR003677.9E-83950IPR001471AP2/ERF domain
PRINTSPR003677.9E-86177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MELQFQHPQP QECQHQAQPP AKGVRRSSST SSSSSRCKFV GVRQRPSGRW VAEIKDTTHK  60
IRVWLGTFET AEDAARAYDE AACLLRGSNT RTNFAVAGSS PASPQQPDSP LASRIRTLLT  120
HKKLKKHASP VAFAPPYAGN RSVSAGNSSG SISFAVSGNG ADDLARRAPN PCSHQRVAEE  180
SYRTCQLIDH FDHPPSWAAA LNPAAPPVAG GNAHCPEIPR GTMKAEKQEG SASASPDGAA  240
AMSTGFARAQ QQADGFDIGN ESCDSLWDLP PICQLSCRSL MY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-143994662ATERF1
3gcc_A3e-143994662ATERF1
5wx9_A3e-1438941471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G140700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276621e-57KJ727662.1 Zea mays clone pUT5589 AP2-EREBP transcription factor (EREB82) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313313.11e-157ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A0Q3H6C11e-156A0A0Q3H6C1_BRADI; Uncharacterized protein
STRINGBRADI1G54450.13e-86(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-23related to AP2 11