PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Brast07G127500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 580aa MW: 63486 Da PI: 9.9931 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.3 | 4.7e-30 | 153 | 206 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +F++ave+LGG+++AtPk +l+ m+v gL+++hvkSHLQ+YR+ Brast07G127500.1.p 153 PRLRWTPDLHMAFLRAVERLGGQDRATPKLVLQRMNVRGLSIAHVKSHLQMYRS 206 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.303 | 149 | 209 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-28 | 149 | 207 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.94E-14 | 151 | 207 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.4E-22 | 153 | 208 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-8 | 154 | 205 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 580 aa Download sequence Send to blast |
MLSSFSLSLP IIPKTFPSSS FPVPILSHII RVLTWWFRLR GQEEGGGGVQ EGMGEVKEKE 60 VVEILEDYGK GTGTWDNTVP PAALDLNEDF GEAGNMSYND ADDGGSGSTS EVAGGRSSSN 120 NSSTNNDSES SKGDMDGCEK VPTVRQYNRS KHPRLRWTPD LHMAFLRAVE RLGGQDRATP 180 KLVLQRMNVR GLSIAHVKSH LQMYRSKKIE HQSSHERAAI SSVFPSMNFQ MRRGDHRFHD 240 MFFQRAAGSS LSSRSLKENS GILESRNADL PDTRRIYDLL QRRKPPSAIH TFDFNNYSSL 300 RNQEWAFTQR VAAARTAAVS DLGPAKGLVH DMTFRKERKP TSHKFDLRDA NAANRTSSPL 360 APTSAAADCR PEDGAKVGSI NWIGSSSRPI SRTMSAAGLT TTGFVLSPSL WRRAAGSHGC 420 EHPKRNISTA TSSSDLVGAS RESGPLLLLQ KEEQREPTAP SKNSEVKEMQ FGRDAWKRKT 480 LASEANGWTP ELQLSLSPNV EADNNYARGK KRSSAELEVG SHNHSLPLSL SLSLRDGVAV 540 DNGDGRDARR LEVATGSRSK KALLGLSTLD LTMSIKALE* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-16 | 154 | 208 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-16 | 154 | 208 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-16 | 154 | 208 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-16 | 154 | 208 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Brast07G127500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024316695.1 | 0.0 | uncharacterized protein LOC100830272 | ||||
TrEMBL | A0A0Q3H6I6 | 0.0 | A0A0Q3H6I6_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G39180.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2754 | 36 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G38300.1 | 7e-32 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Brast07G127500.1.p |