PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G123300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CPP
Protein Properties Length: 496aa    MW: 54585.6 Da    PI: 7.7361
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G123300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.94.9e-1469108242
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                         +kk+CnCk+s+Clk+YCeCfaag +C+  C+C++C Nk e+
  Brast07G123300.1.p  69 RKKQCNCKNSHCLKLYCECFAAGLYCDG-CNCKQCGNKVEN 108
                         689*************************.********9875 PP
2TCR50.73.4e-16151190140
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         k++kgCnCkks ClkkYCeCf+a+  Cs++CkC dCkN e
  Brast07G123300.1.p 151 KHNKGCNCKKSGCLKKYCECFQANILCSKNCKCMDCKNFE 190
                         589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011146.8E-1368108IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.67469191IPR005172CRC domain
PfamPF036381.2E-1070105IPR005172CRC domain
SMARTSM011141.0E-18151192IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12154189IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MEPEKQQKVQ PPVPAPAPAA ELKVPTHQPP PKPAASTQPA MPIPRPWPVA FTPMKPMVEV  60
KSGSTPPKRK KQCNCKNSHC LKLYCECFAA GLYCDGCNCK QCGNKVENEK ARQEAINNTK  120
QRNPKAFQPK IENVSNTLSV RKDAGVPSFP KHNKGCNCKK SGCLKKYCEC FQANILCSKN  180
CKCMDCKNFE GSEELQAIIQ GDNASDRNNI QQATNVTLNG AIESSGHKCS PARRRHLDDP  240
LGSEANHVDA TQVASSTGLE GCIGNYQSKS KMVYRSPLAH TIHPTDVNDL ANHLVIVCRK  300
ATEAFLTVAD RKVEIEVERA IHTKMELNND KITNQEVQKA VVRQPDDATY IDHRNVGDLE  360
SPWFNTQEDY RPASPGTQAL MCDEQGTTFG TDYRSSFPMA LHDQDTSELN VVQEKTVLTG  420
FRDYLRLLIT RGKINANNCA GITEGNISSE SAMELEYQRH QSVSTSLLPL KAVENPKSPD  480
DSENPKASEP SSSNC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-277020011132Protein lin-54 homolog
5fd3_B2e-277020011132Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G123300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753297.10.0protein tesmin/TSO1-like CXC 5 isoform X2
TrEMBLI1GYE30.0I1GYE3_BRADI; Uncharacterized protein
STRINGBRADI1G40407.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57552653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.17e-87Tesmin/TSO1-like CXC domain-containing protein