PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast07G109700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C3H | ||||||||
Protein Properties | Length: 384aa MW: 43272.1 Da PI: 8.2079 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.8 | 4.2e-09 | 35 | 55 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G C+yG+rC++ H+ Brast07G109700.1.p 35 VCTFYLK-GSCSYGSRCRYDHV 55 6******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.328 | 2 | 29 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.6E-5 | 2 | 28 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-7 | 3 | 27 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.502 | 30 | 57 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-4 | 32 | 56 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.45E-5 | 32 | 54 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 35 | 54 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-6 | 35 | 55 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.085 | 162 | 188 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.601 | 162 | 189 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 2.0E-9 | 224 | 290 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 4.24E-10 | 226 | 297 | No hit | No description |
CDD | cd00162 | 0.00113 | 230 | 290 | No hit | No description |
Pfam | PF13639 | 3.7E-7 | 230 | 289 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 2.9E-7 | 231 | 288 | IPR001841 | Zinc finger, RING-type |
PROSITE profile | PS50089 | 12.297 | 231 | 289 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 255 | 264 | IPR017907 | Zinc finger, RING-type, conserved site |
PROSITE profile | PS50103 | 13.648 | 318 | 347 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.01 | 318 | 346 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MSTKRVLCKF FVHGACLKGE YCEFSHNWSD QANNVCTFYL KGSCSYGSRC RYDHVKVSRN 60 PPVPTPPSSS TPKRNSLVPL PPSSTAARVA STSLQPASAG RPVHIGHQTN PSNQRQQISM 120 DMLAHSETKP AWRNEFQLDS VSEDGIDWSS NRTVQNQTSK KLADMPICSF AAAGNCPYEE 180 ECPHMHGDLC ATCGKMCLHP YRPDEREEHT KLCEKNHKRL EALKRSQEIE CSVCLDRVLS 240 KPTAAERKFG LLSECDHPFC ISCIRNWRGN SPTSGMDVNS ALRACPICRK LSYYVIPSVL 300 WYFSKEEKTE IIDNYKSKLK SIDCKYFDFG TGTCPFGTSC FYKHAYRDGR LEEVILRHLD 360 SEDGTTLIAK NIRLSDFLSR LHL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast07G109700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK248188 | 0.0 | AK248188.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf156g01, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003563906.1 | 0.0 | E3 ubiquitin-protein ligase makorin isoform X1 | ||||
Refseq | XP_010227725.1 | 0.0 | E3 ubiquitin-protein ligase makorin isoform X1 | ||||
Swissprot | Q5ZA07 | 0.0 | C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | I1GYR5 | 0.0 | I1GYR5_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G42720.2 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5326 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-146 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast07G109700.1.p |
Publications ? help Back to Top | |||
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