PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G089300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family E2F/DP
Protein Properties Length: 444aa    MW: 49357.1 Da    PI: 6.4312
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G089300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP726.5e-2351116171
             E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         rk+ksL+ll+++f++l+ + + ++v l+++a++L    v  +rRRiYDi+NVLe+++++ +++kn+++w+g
  Brast07G089300.1.p  51 RKQKSLGLLCSNFVALYDRDDVETVGLDDAARRL---GV--ERRRIYDIVNVLESVGILVRRAKNRYTWIG 116
                         79****************9999************...**..****************************98 PP
2E2F_TDP77.71.1e-24218298171
             E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                         rkeksL+lltq+f+kl+ + e ++++l+++a+ L+ e     ++++k+RR+YDi+NVL++lnliek     ++k+++rw g
  Brast07G089300.1.p 218 RKEKSLGLLTQNFVKLFLTMEVETISLDDAARLLLGErhaesNMRTKVRRLYDIANVLSSLNLIEKtqqvdSRKPAFRWLG 298
                         79****************************************************************9999999******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-2547117IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.36E-1650115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013728.6E-2951116IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023198.0E-2152116IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.0E-23215299IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.8E-32218298IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.5E-20219298IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.81E-12220298IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MDTAAGAEAS ATAAQAQGQP PPYLAPRLEL EGDGGGLGGA GRAFRHHAYS RKQKSLGLLC  60
SNFVALYDRD DVETVGLDDA ARRLGVERRR IYDIVNVLES VGILVRRAKN RYTWIGFEGV  120
PAALKELKER ALREMSGLVS PLLEEPSATN VSDDEDEDDK LGDADGDAES EKLSQSMDTT  180
SDKLSQSMDT TSDKLSQSMD NTSDKPDTPR CQLRSDHRKE KSLGLLTQNF VKLFLTMEVE  240
TISLDDAARL LLGERHAESN MRTKVRRLYD IANVLSSLNL IEKTQQVDSR KPAFRWLGQA  300
KRKEGDDVTV ALPPTRTILS NKRAFGTDIT NIDTKRGKWD SGTENKGKLK QGDGSTSRTF  360
ENQLGQGKSS GFVYGPFHPA VARKQELDNR ALREKERKHI QDWQNLTTSL QYQNPAINAL  420
FGHYVEAWKS WYLDFTRDDP STS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A4e-37502903228Transcription factor E2F8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1391396LREKER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G089300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753581e-165AK375358.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3092B12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564010.10.0E2F transcription factor-like E2FE
TrEMBLI1GZC30.0I1GZC3_BRADI; Uncharacterized protein
STRINGBRADI1G44520.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-102DP-E2F-like 1