PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G082700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Nin-like
Protein Properties Length: 829aa    MW: 93055 Da    PI: 8.2939
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G082700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK42.81e-13726762238
              RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRq 38 
                         ek +++e +s yF+lpi +AA+eL+v+lT+LK++CR 
  Brast07G082700.1.p 726 EKVLTFELVSWYFHLPIIQAARELNVGLTILKKKCRV 762
                         7889********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.101.7E-1132307IPR011990Tetratricopeptide-like helical domain
SuperFamilySSF484522.82E-637393IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513758.4516094IPR002885Pentatricopeptide repeat
PfamPF015350.36288IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.452125159IPR002885Pentatricopeptide repeat
PfamPF015355.7E-9127157IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.6E-7127156IPR002885Pentatricopeptide repeat
PfamPF015355.1E-5159185IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.1E-5159184IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.095160186IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.695187217IPR002885Pentatricopeptide repeat
PfamPF015350.039192212IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.065223257IPR002885Pentatricopeptide repeat
PfamPF015353.1E-4226250IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.3E-5226250IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.843268298IPR002885Pentatricopeptide repeat
PfamPF015353.8E-4270299IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.7E-4270300IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.082299333IPR002885Pentatricopeptide repeat
PfamPF015354.1E-7301327IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.2E-5301326IPR002885Pentatricopeptide repeat
PfamPF015352.7E-5332361IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.93334360IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.7E-11359381IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137510.358361395IPR002885Pentatricopeptide repeat
PfamPF130411.8E-10362408IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.5E-5363396IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.103.9E-4382391IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.886396426IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.103.9E-4427491IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513758.385430460IPR002885Pentatricopeptide repeat
PfamPF130417.3E-11460507IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.178461495IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.8E-6463496IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.552496526IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0019498529IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.873532562IPR002885Pentatricopeptide repeat
PfamPF015350.62536559IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.103.9E-4595618IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513756.61598632IPR002885Pentatricopeptide repeat
PROSITE profilePS515199.875712797IPR003035RWP-RK domain
PfamPF020422.2E-8729763IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016554Biological Processcytidine to uridine editing
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    Send to blast
MRRWPPPITG VAKHRALATA AVASPTDELV RQHNRSLVAL LRRGRLAAAR RLFDALPARS  60
VVTWNSFLAA LARSRDVAAA RAFFASMPVR DAVSWNTLLA AYSRSPHSDH LAAARRLFDE  120
MPQRDAVTWN TLLGAYARRG LMVEAEKLFD EMPQRNVASW NTMVTGFFSA GQVNKALDMF  180
DAMPVKDSTS LGTLVSGFIK NGRLHEAEEL LTKCLRVLDM DKAVDAYNTL IAAYGQVGRV  240
SDARRLFDMI PRGQYQRKTN NMRVFARNVV SWNSMMTCYI RTGDVCSARA IFNEMPDKDL  300
VSWNTMIAGY TKVSDVEEAE KLFWEMPDPD IVSWNLIIWG FTQKGDIEHA QGFFDRMPER  360
GTISWNTMIS GYEQNGHYVG AIKLFTKMLA VGGTPDRHTF SSVLAACASL PMLRLGVQLH  420
QLIEKSFLPD TAISNALITM YSRGGALTDA EAIFKQMPQK DLVSWNALIG GYEHHGRATE  480
ALQLFKDMRS ARVMPTHITF ISLLSACGNA GLISEGWMVF DTMIHEYGIA ARIEHYAALV  540
NLIGRHGQLD DALEVINSMP IAPDRSVWGA FLGACTAKKN ELLALMAAKA LSKIDPESSA  600
PYVLIHNLHA HEGRWGSASV VREEMEQQGI HKHPGYSWID LHDKCSCLLA FRGVPVAQSK  660
KQKDEPGNSS ELDTIFDDDV LKYWDDMEQS ESKREESEKG SPIICCSDGM GAAFHTKKED  720
RVRPEEKVLT FELVSWYFHL PIIQAARELN VGLTILKKKC RVLVLKQAGK TNDDEQLKAM  780
VEMLEQERRL LEQKPYVEME EKTKRLRQAC FKANYKKRRL LALEAREA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9g_C3e-55305811432pentatricopeptide repeat protein dPPR-U8C2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G082700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753167.10.0pentatricopeptide repeat-containing protein At1g62260, mitochondrial
RefseqXP_024313780.10.0pentatricopeptide repeat-containing protein At1g62260, mitochondrial
TrEMBLA0A446Y7E10.0A0A446Y7E1_TRITD; Uncharacterized protein
STRINGBRADI1G45170.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108991212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64100.22e-35pentatricopeptide (PPR) repeat-containing protein