![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Brast07G065300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 1064aa MW: 118195 Da PI: 6.4824 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.5 | 5.2e-23 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae++ ++++++ +l+ +d++ sW++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F Brast07G065300.1.p 127 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfaMQPPAQ--ELMAKDLHDISWKFRHIFRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFI- 214 99*****************************95444444..8************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++++ +l+++++r+ Brast07G065300.1.p 215 -RDEKSQLLLGIRRS 228 .45677789999986 PP | |||||||
2 | Auxin_resp | 122.9 | 2.3e-40 | 253 | 335 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++kal+++vs+GmRf+m feteds rr++Gt++g+ dldpvrW+nS+Wr+L+ Brast07G065300.1.p 253 AAHAAANSSPFTIFYNPRASPSEFVIPLAKYNKALYTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPVRWKNSHWRNLQ 335 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.28E-43 | 117 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-39 | 120 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.58E-19 | 126 | 227 | No hit | No description |
PROSITE profile | PS50863 | 12.125 | 127 | 229 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-22 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.5E-21 | 127 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.8E-35 | 253 | 335 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.2E-9 | 943 | 1033 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.356 | 947 | 1040 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.26E-7 | 962 | 1026 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1064 aa Download sequence Send to blast |
MKDQGSAGVS PGPPEGEKKA INSELWHACA GPLVAMPPVG SLVVYFPQGH SEQVAASMHK 60 EVDVIPNYPS LPSKLICKLL SLTLHADSET DEVYAQMTLQ PVSKYDREAM LASELGLKQN 120 KQPMEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFAM QPPAQELMAK DLHDISWKFR 180 HIFRGQPKRH LLTTGWSVFV STKRLLAGDS VLFIRDEKSQ LLLGIRRSTR PQPALSSSVL 240 SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML 300 FETEDSGVRR YMGTITGIGD LDPVRWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT 360 PFYICPPPFF RPKLPKQPGM PDDENEVESA FKRAMPWLAD DFALKDVQSQ LFPGLSLVQW 420 MAMQQNPQML PASAPAVQSP YLTSSALAMQ DGMGTGNEDP TRRLNIQGQN IGLPNFQVGS 480 KMDHSVMAQH QQQPHQLSQQ QQVQPSQQSS MALQQQQAQL LQQNAIHLQQ QQEHLQRQQS 540 QSQQQQEHLQ RQQSQPQQQL KTAESMEQHK LREQQPQGGQ AVSQAQLLSP IFQPSSSQLQ 600 QLGLPKSPTQ RPGFPGLQTA GSLQQPALTQ TPQVQQAAEY QQALLQSQQQ QIQQLSQPEM 660 QLQLLQKIQH QNMLSQLNPQ HQSQLIQQLS QKNQEFLQQQ ILQHQLSGSD VLGQFKQSQQ 720 TPSNHMTGSL TPQQLVRSQS ALAESEDPSS STAPSAGRIS PMNSLSKTQH SSRNLTDMTT 780 SPHIDNLLQE IQSKSDNRNK NDRQGSKETI PVPSRYPVSD QLDASSATSF CLDESPREGF 840 SFPPVCLDSS AQVDPRDNFL IAENVDSLMP DALLSRGMAS GKSICDLPSG QRDHREVENE 900 LSSAAFSSQS FGVADMSFKP GCSGDMAVND GGMPSQGLWN NQTQRMRTFT KVQKRGSVGR 960 SIDITRYRNY DELRHDLACM FGIQGQLEDP YRMDWKLVYV DHENDILLVG DDPWEEFVGC 1020 VKSIKILSSV EVQQMSLDGD LGGIPSQAQA CSASDDANAW RGS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-162 | 17 | 356 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Brast07G065300.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK374262 | 0.0 | AK374262.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3058N24. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003564148.1 | 0.0 | auxin response factor 16 isoform X1 | ||||
Refseq | XP_014753144.1 | 0.0 | auxin response factor 16 isoform X1 | ||||
Swissprot | A3B9A0 | 0.0 | ARFP_ORYSJ; Auxin response factor 16 | ||||
TrEMBL | I1H027 | 0.0 | I1H027_BRADI; Auxin response factor | ||||
STRING | BRADI1G46602.2 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9045 | 33 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Brast07G065300.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|