PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast07G040300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 278aa MW: 28825.5 Da PI: 4.4227 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.3e-19 | 80 | 130 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +g+++AeIrdp++ r+r++lg+f+taeeAa ++ a+++l+g+ Brast07G040300.1.p 80 KYRGVRLRR-WGKYAAEIRDPRS---RARVWLGTFDTAEEAAMVYDSAALRLRGA 130 8*****998.**********954...4**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 9.4E-30 | 79 | 137 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.5E-12 | 80 | 129 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.13 | 80 | 137 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-21 | 80 | 137 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.6E-35 | 80 | 143 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.73E-30 | 80 | 137 | No hit | No description |
PRINTS | PR00367 | 9.4E-10 | 81 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.4E-10 | 103 | 119 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MKQEQIDRAA AAFTATPRIL RVSYEEDPDV TDSSSGDDAD PAVPLPRVPL PASTSVIGAK 60 RRPAGAGGAS GAPMAAGARK YRGVRLRRWG KYAAEIRDPR SRARVWLGTF DTAEEAAMVY 120 DSAALRLRGA SAVTNFPSPP TAAESSDDDS RFSSGSPPSV LRPLLIPPPK LQPPPKAAPD 180 KPDLSSCGGL LGDDDPCCCC CCGGGFPTFL WPDVEDCMLA AGILPGATTD GDDCMLSRLE 240 GCVTAAVEPV TASLADLGEL PTWSEVDGLF FGDGAAK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-20 | 76 | 144 | 1 | 70 | ATERF1 |
3gcc_A | 2e-20 | 76 | 144 | 1 | 70 | ATERF1 |
5wx9_A | 2e-20 | 80 | 141 | 14 | 76 | Ethylene-responsive transcription factor ERF096 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast07G040300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369008 | 2e-31 | AK369008.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2083K22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010229938.1 | 1e-109 | ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | A0A0Q3L8N1 | 1e-108 | A0A0Q3L8N1_BRADI; Uncharacterized protein | ||||
STRING | TRIUR3_07811-P1 | 4e-42 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13133 | 23 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11140.1 | 6e-25 | cytokinin response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Brast07G040300.1.p |