PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G234000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 358aa    MW: 37549.1 Da    PI: 8.2466
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G234000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.53.9e-30233287156
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                         k+r++W+peLH++Fv+a++qLGG++ AtPk+i+e m+v+gLt+++vkSHLQkYRl+
  Brast06G234000.1.p 233 KARRCWSPELHRQFVNALNQLGGPN-ATPKQIRERMQVDGLTNDEVKSHLQKYRLH 287
                         68*******************9997.****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.367230289IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-28231290IPR009057Homeodomain-like
SuperFamilySSF466897.62E-18231290IPR009057Homeodomain-like
TIGRFAMsTIGR015577.4E-25233287IPR006447Myb domain, plants
PfamPF002492.8E-8235285IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGLDAGESAM GADLSLDLKA FAARTVAGRV PAAAMEDVIS KLEEEKGKIE VFGRELPLCV  60
RLLADVIEVL KEKVEKKEEE KKKGGDHGDA AAEGIGAGGD KSSWMSSAQL WIGGGSAAPE  120
KRIGEGRSSS EQRPQGGGGG LFGLGPFKAV GSGGPAFLPP GSRKEALRIP DLPFQSSASA  180
SASASGGLLQ DARLQVAGFG QEAPAAPPLS LQPQPQPQQT AQQQQQQQQQ ARKARRCWSP  240
ELHRQFVNAL NQLGGPNATP KQIRERMQVD GLTNDEVKSH LQKYRLHTSR MVSGGPLMNH  300
RPVVLAGGLW MLPSEESSSQ SGGSPPGPLN YSNSGVAVSS AVSGEEDDGR SRSHGWK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G234000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003557660.11e-130transcription factor NIGTH1 isoform X2
TrEMBLI1H4791e-129I1H479_BRADI; Uncharacterized protein
STRINGBRADI1G58830.11e-130(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68670.16e-28G2-like family protein