PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NF-YC

Protein Properties

Length: 135aa MW: 15756.8 Da PI: 11.4785

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast06G232300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	111.2	5.6e-35	2	80	8	86
NF-YC 8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86 ++ie++ +fk h+lPl ri+ki+k+ d++mi++eaP +l+kace+fileltlrswl++++n+rrtl+k+dia av+r Brast06G232300.1.p 2 AEIEQMLEFKTHNLPLVRINKIMKTVRDIRMIASEAPGVLAKACEIFILELTLRSWLQTKDNNRRTLQKNDIAVAVSRM 80 579*************************************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	8.98E-21	4	80	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	5.8E-28	8	77	IPR009072	Histone-fold
Pfam	PF00808	5.9E-18	14	77	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MAEIEQMLEF KTHNLPLVRI NKIMKTVRDI RMIASEAPGV LAKACEIFIL ELTLRSWLQT 60 KDNNRRTLQK NDIAVAVSRM MPLISWWTSC RRMTRFLPAT MQTMVLAFWG MRIPFRIRSS 120 NSHLTMVDKM NERS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	7e-32	3	79	6	82	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	64	70	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269\|PubMed:26542958}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast06G232300.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269\|PubMed:26542958}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003571523.1	7e-35	nuclear transcription factor Y subunit C-4
Refseq	XP_014756175.1	7e-35	nuclear transcription factor Y subunit C-4
Swissprot	Q655V5	9e-33	NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBL	I1I1W3	2e-33	I1I1W3_BRADI; Uncharacterized protein
STRING	BRADI3G17790.1	3e-34	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	2e-34	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	Brast06G232300.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]