PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Brast06G192500.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

M-type_MADS

Protein Properties

Length: 244aa MW: 26611.4 Da PI: 9.1685

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast06G192500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	44.6	1.9e-14	9	54	1	46
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 +ri n+ r f kR n + KKA ELS+LC+++v+v+++++ l Brast06G192500.1.p 9 ERIPNDVARRAAFRKRVNRLTKKAGELSTLCNTKVCVLVYAEGEAL 54 6899************************************998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	15.096	1	56	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.4E-11	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.07E-16	3	94	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-7	3	23	IPR002100	Transcription factor, MADS-box
CDD	cd00266	5.07E-17	3	82	No hit	No description
Pfam	PF00319	4.7E-13	10	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-7	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-7	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MPRKHTTVER IPNDVARRAA FRKRVNRLTK KAGELSTLCN TKVCVLVYAE GEALPEVYPS 60 VAQAVPLLQR FKGTPEIDQY KKTVTQEDFL RQRMDRLKLQ IQKTAPENCE RDTAILLHQA 120 IAGRLQGGLE GLAPEKSDSV RWMVQMRLKS IGELIAKRQA QAEAALQLQS LPAPVPPPPY 180 QQDEASQKEI ISTVNEVRSD GDLGTIVFSG ISGGDGAGAN TSTGAGFSWQ WDLGASSSSM 240 PPM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast06G192500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010228259.2	1e-117	agamous-like MADS-box protein AGL80
TrEMBL	A0A0Q3HCA8	1e-115	A0A0Q3HCA8_BRADI; Uncharacterized protein
STRING	BRADI1G55040.1	6e-55	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP363	36	202

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05860.2	4e-19	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	Brast06G192500.1.p