PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G183200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 372aa    MW: 41375.7 Da    PI: 10.9739
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G183200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.2e-11253300455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+++Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+ Lq
  Brast06G183200.1.p 253 SHSIAERARREKISERMKMLQDLVPGC----NKVIGKASVLDEIINYIQALQ 300
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.53E-9247304No hitNo description
SuperFamilySSF474597.72E-18247316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.145249299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-18249318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-8253300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-11255305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MFVNVFFHFL FRSRKKRKLW TFSRETEERN ENRSSAPEPG PDPSQTPTRP PRAARPANRS  60
GPKSLHRFQF FFSRSLPRIR TVLPVPSFTV LLLADSEVVL AKRTPSRRRL PDLAAPHARE  120
CGTLNPGRLP PRMDPALPDH WRRPVHLEAS SVVTDRSSGG GGGRRRAQHG DDSSMLVSTS  180
GTGAGGAGQD LADPEEKRLK KMKSGDDDGN LRTNAQTDSG NASKVVDRNP TPQVPPKQDY  240
IHVRARRGQA TDSHSIAERA RREKISERMK MLQDLVPGCN KVIGKASVLD EIINYIQALQ  300
RQVEFLSMKL EAVNAHVNNR IASFQSKDVG AEPFHTALGL TLDPQTPREH AQGSTSEWLH  360
MQIGNTYERV T*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G183200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561318.31e-153transcription factor BHLH094
SwissprotQ69WS31e-102BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A0Q3HD701e-151A0A0Q3HD70_BRADI; Uncharacterized protein
STRINGBRADI1G54690.11e-127(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-59BIG PETAL P