PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G175500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 635aa    MW: 72816.3 Da    PI: 7.7514
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G175500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR140.21.1e-1269148190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         +fYn Y+ evGF +r +k + + + +   +++ vC + gk+ +e++          + r+gC a +++ +++d+ w++ + +  HnH+l+
  Brast06G175500.1.p  69 NFYNLYSWEVGFGIRYAKCRLNVHRK-KCMQEIVCGCAGKPLTENSW---------SARCGCPALIRLLRSEDKGWYICEHRDTHNHPLS 148
                         6*****************99995555.67899********9987655.........9*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-969148IPR004330FAR1 DNA binding domain
PfamPF105512.3E-21264352IPR018289MULE transposase domain
PROSITE profilePS5096610.274474510IPR007527Zinc finger, SWIM-type
PfamPF044342.5E-4482509IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MGRSLTQASG NDGGCAMVRI GAAPEERELN PELTSALENS IKNYVERKSD IVVNPAVGTS  60
FDCLEDAYNF YNLYSWEVGF GIRYAKCRLN VHRKKCMQEI VCGCAGKPLT ENSWSARCGC  120
PALIRLLRSE DKGWYICEHR DTHNHPLSKT CGEKRHWKSH GQIDRYAKQF VKQLQENNIS  180
LGKVYSIIGS FLGSMDRIPF TKMSLKTLCG KISQEQSDND AVKTLDVFSK MLEAGPDFKY  240
TVQVDDDSRI KTNVDVRQVH EPVHVTNLYD MTFGLFVAVN NHFQSIILGG VLMRDERVES  300
FKWVFAEFMR MIGGKDRHPL TILTDQARSM ELAIAEVLPN TKHRWCKWHV LKKAKESLGA  360
LYGKSEFRAE FHKLVNLMCT EEEFESCWAE MLEKYGLQKQ PFLAQIYESG AVLKANLPIE  420
VHASKVYTRT MFEQFGHSLY ESGQYMLEEI ELRKSYIARH TRHVFREKWR KTIYRLQVDE  480
DKGEYKCECG SFEHFGMPCC HQIKVLLHLG HMEIPRSLVL KRWTRDARDI LPPHLRSYQK  540
DQGCPRAVTY RHSNLSLTAF EIVRMGDSNP AAYELAMELM VDVKTRLEPL CATPDGLGVQ  600
EREQAELTGG NAEVGELDRR QQQPQERAKH ASQE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G175500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156512.10.0protein FAR1-RELATED SEQUENCE 12-like
TrEMBLA0A2K2DJU30.0A0A2K2DJU3_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI1G43906.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.24e-39FAR1-related sequence 3