PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast06G092000.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 898aa MW: 101193 Da PI: 7.8726

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast06G092000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.1	4.6e-26	110	197	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA++vGF vr+s+ ++++n it+rtfvCs+eg+re++k ++++ +r+etr+gC a l+++++ +gk+++t+++ +HnH+la Brast06G092000.1.p 110 EFYNAYAENVGFFVRRSTLWTTSKNI-ITRRTFVCSREGFREKKKGM-KESKCPRPETRIGCPAGLTIRLTANGKYRLTEFVPNHNHQLA 197 6******************97766.************9988.9999**********************************97 PP
2	FAR1	82.5	7.2e-26	239	326	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+ YA ++GF++r+++++ + ++ it+r fvCskeg+re++k + + +++r+etrtgC a++++++ ++gk++vt++++ HnH+l Brast06G092000.1.p 239 EFYSMYAGKIGFNIRRASMTVN-AENVITRRMFVCSKEGFREKKKGGAYRVKKPRPETRTGCPACMVIRLASNGKYHVTEFVTFHNHQL 326 6**************99998.5566****************9*************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-23	110	197	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	6.4E-22	239	326	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.2E-23	442	536	IPR018289	MULE transposase domain
Pfam	PF04434	2.3E-9	710	756	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.967	710	757	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.1E-6	732	759	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 898 aa Download sequence Send to blast
MSSNSSGGAK EKGLQIFTPL VTPPFAQSFR PVHALGSPTT DLRLSQQSWP GNIVLHPCTP 60 WPGNPANPLQ NGELVADVAA ADVNLVIDRC DDKMLPKVDM LFDGENEAYE FYNAYAENVG 120 FFVRRSTLWT TSKNIITRRT FVCSREGFRE KKKGMKESKC PRPETRIGCP AGLTIRLTAN 180 GKYRLTEFVP NHNHQLATAS MIQMLKEKKI RRKARAVREN LVDDTVRTPE FENEDEAYEF 240 YSMYAGKIGF NIRRASMTVN AENVITRRMF VCSKEGFREK KKGGAYRVKK PRPETRTGCP 300 ACMVIRLASN GKYHVTEFVT FHNHQLGAAA ASDLVMASQS TGNGQDNGVD LADISPDDSI 360 NEQNLIKDYV TSNCLGGRSR KRCKCKVPRH GDVGATLEYL QKMQHDNPSF FYAVKSDGDG 420 NFTNFVWVDS KSIIDFAHFG DVVCLDSGYA VQGYGRPVAL FIGLNHHKQT VIFGAALLYD 480 ESFEAFRWLF DTFKMAMNGT HPKTFLTDRS SVISEAVAAS WPGTAHRYCV WQIYQNALQQ 540 LSHAFHGSRT LEYDFKRCLF DCEDEAEFLA AWREMLEKYD LEDNQWLTDL FALKEKWALP 600 YGRTAFYADM KSVQQKENLR HELKKHLSLE CDLLSFFVQF ERLLCDRRIA ELQADVGASQ 660 STKKPPSMRI LRQAANIYTH AAYKMFEREF ELYMDCMLYN CGEMGTITEY RISVEDNPKD 720 HFVKFDSLNS MASCSCKGFE FVGVPCRHIL KVLDTRNIKD LPPQYILKRW RKDAKSGSSN 780 GGYAYPFDGD PQLALTKRHT LLCRLFSIAA ARAATAAESF AYMENQSGIL LNQVEQVLQN 840 SPLNIAAGIG ASCVRTQNPV ESMVTADLHG HTSYIDGSTD GSLTFPFITG ADTLDYR*

Sequence ? help Back to Top

Protein Sequence Length: 898 aa Download sequence Send to blast

MSSNSSGGAK EKGLQIFTPL VTPPFAQSFR PVHALGSPTT DLRLSQQSWP GNIVLHPCTP  60
WPGNPANPLQ NGELVADVAA ADVNLVIDRC DDKMLPKVDM LFDGENEAYE FYNAYAENVG  120
FFVRRSTLWT TSKNIITRRT FVCSREGFRE KKKGMKESKC PRPETRIGCP AGLTIRLTAN  180
GKYRLTEFVP NHNHQLATAS MIQMLKEKKI RRKARAVREN LVDDTVRTPE FENEDEAYEF  240
YSMYAGKIGF NIRRASMTVN AENVITRRMF VCSKEGFREK KKGGAYRVKK PRPETRTGCP  300
ACMVIRLASN GKYHVTEFVT FHNHQLGAAA ASDLVMASQS TGNGQDNGVD LADISPDDSI  360
NEQNLIKDYV TSNCLGGRSR KRCKCKVPRH GDVGATLEYL QKMQHDNPSF FYAVKSDGDG  420
NFTNFVWVDS KSIIDFAHFG DVVCLDSGYA VQGYGRPVAL FIGLNHHKQT VIFGAALLYD  480
ESFEAFRWLF DTFKMAMNGT HPKTFLTDRS SVISEAVAAS WPGTAHRYCV WQIYQNALQQ  540
LSHAFHGSRT LEYDFKRCLF DCEDEAEFLA AWREMLEKYD LEDNQWLTDL FALKEKWALP  600
YGRTAFYADM KSVQQKENLR HELKKHLSLE CDLLSFFVQF ERLLCDRRIA ELQADVGASQ  660
STKKPPSMRI LRQAANIYTH AAYKMFEREF ELYMDCMLYN CGEMGTITEY RISVEDNPKD  720
HFVKFDSLNS MASCSCKGFE FVGVPCRHIL KVLDTRNIKD LPPQYILKRW RKDAKSGSSN  780
GGYAYPFDGD PQLALTKRHT LLCRLFSIAA ARAATAAESF AYMENQSGIL LNQVEQVLQN  840
SPLNIAAGIG ASCVRTQNPV ESMVTADLHG HTSYIDGSTD GSLTFPFITG ADTLDYR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast06G092000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014753080.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024312469.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024312470.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024312471.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024312472.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024312473.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	I1GTG2	0.0	I1GTG2_BRADI; Uncharacterized protein
STRING	BRADI1G24700.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-105	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Brast06G092000.1.p