PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G087800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 471aa    MW: 50136.8 Da    PI: 6.2386
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G087800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS363.14e-111744472374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPil 91 
                          +lLl+cAeav+ ++l +a+ lL ++ elasp g++ +R+aayf  AL ar+++s  + y+ lp  ++++++ s ++++a+++++ +sP++
  Brast06G087800.1.p  74 LSLLLRCAEAVAMDSLPEARDLLHEIAELASPFGSSPERVAAYFGDALCARVLSSYLGAYSPLPLAPAQQQQqSRRVASAFQAYNALSPLV 164
                         689************************************************************88777766648888999*********** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egpp..slRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                         kfsh+taN+aIl+a++ge+rvH++D+di+qGlQWp L++ LasRp   +++p  slR+Tg+g+    s ++le+tg+rLa+fA++lg+pfe
  Brast06G087800.1.p 165 KFSHFTANKAILQALHGEDRVHVVDLDIMQGLQWPGLFHMLASRPcsnSSKPllSLRVTGLGA----SLDALEATGRRLADFAASLGLPFE 251
                         *********************************************9985555579********....9*********************** PP

                GRAS 178 fnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                         f+++  k  +  ++++L ++  gEa++V++++  h l+d ++s +     +L++++sl+Pk+v++veq++ h +++Fl rf+eal+yysal
  Brast06G087800.1.p 252 FRPVEGKIGHVADTDALLLRDeGEATVVHWMH--HCLYDVTGSDAG----TLRVLRSLRPKLVTIVEQDLGH-GGDFLGRFVEALHYYSAL 335
                         ***8666667779999988888*********9..888888888888....**********************.789*************** PP

                GRAS 268 fdsleak......lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                         fd+l a+      + +e+ +r+ vEr+llg ei+n+va  g +r+ + + +e+W + l++aGF+pv+ls   a+qa++ll +++++gy++ 
  Brast06G087800.1.p 336 FDALGAGagagagAEEEEAQRHAVERQLLGAEIRNIVAVGGPKRTGEVR-VERWGDELRRAGFRPVSLSGGPAAQARMLLGMCPWKGYTLA 425
                         ****8874555545555599***********************998887.9**************************************** PP

                GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
                         ee+g+l lgWkd +L+++S+W+
  Brast06G087800.1.p 426 EEDGCLKLGWKDLSLLTASSWE 447
                         *********************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.48247427IPR005202Transcription factor GRAS
PfamPF035141.4E-10874447IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MIQGVLSRAS AADAAAMKAA KRAASIPEDE EAMVSSRGKR LQLHGSGVHQ QQQGSPAAEE  60
GKVSAAETRG LRLLSLLLRC AEAVAMDSLP EARDLLHEIA ELASPFGSSP ERVAAYFGDA  120
LCARVLSSYL GAYSPLPLAP AQQQQQSRRV ASAFQAYNAL SPLVKFSHFT ANKAILQALH  180
GEDRVHVVDL DIMQGLQWPG LFHMLASRPC SNSSKPLLSL RVTGLGASLD ALEATGRRLA  240
DFAASLGLPF EFRPVEGKIG HVADTDALLL RDEGEATVVH WMHHCLYDVT GSDAGTLRVL  300
RSLRPKLVTI VEQDLGHGGD FLGRFVEALH YYSALFDALG AGAGAGAGAE EEEAQRHAVE  360
RQLLGAEIRN IVAVGGPKRT GEVRVERWGD ELRRAGFRPV SLSGGPAAQA RMLLGMCPWK  420
GYTLAEEDGC LKLGWKDLSL LTASSWEPMS SDGDGQDDLG AAARQEGHGS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-153564502382Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G087800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560068.10.0scarecrow-like protein 23
SwissprotQ9FHZ11e-161SCL23_ARATH; Scarecrow-like protein 23
TrEMBLI1GTB50.0I1GTB5_BRADI; Uncharacterized protein
STRINGBRADI1G24310.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-145GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]