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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast06G080400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 338aa MW: 36441.2 Da PI: 8.3938 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5.3e-18 | 98 | 148 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++ GVr+++ +grWvAeI+d + ++ r +lg+f tae Aa+a+++a++ l+g Brast06G080400.1.p 98 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEAAARAYDEAARLLRG 148 79********.7*********32...35***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.00E-17 | 98 | 156 | No hit | No description |
Pfam | PF00847 | 3.3E-12 | 98 | 148 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.88E-19 | 98 | 157 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.6E-34 | 99 | 162 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.152 | 99 | 156 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-28 | 99 | 156 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-7 | 100 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-7 | 122 | 138 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0035865 | Biological Process | cellular response to potassium ion | ||||
GO:0048528 | Biological Process | post-embryonic root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MPKPPINHPL CQAKQSKDLT DTCLLITSPT FPNSKHTIKT QALPPSHMEL HFQVQPPVLQ 60 LQDYCYYYHH QQEAMAAAAA QAKPTKPRGR KKGGSSHSKF VGVRQRPSGR WVAEIKDTTQ 120 KIRMWLGTFE TAEAAARAYD EAARLLRGAE ARTNFAPRIS PDCPLALRIR GLLHHKKLSK 180 ARSPAASAKI PSSSTPAAMT TTSNSNSSST SSSSSGVSCE GAAKQAVVEA GEVYRPDFGS 240 LGAEELEPWM FEPAALGARF TELDAFVAVD GGCAAQSAAE ESSTPAAAGG MAEFERMKVE 300 RRISASLYAM NGLQEYFDKV FDASACDPLW DLSPLCH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 94 | 155 | 9 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00521 | DAP | Transfer from AT5G19790 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast06G080400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374106 | 1e-146 | AK374106.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3054G17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014751948.1 | 1e-148 | ethylene-responsive transcription factor RAP2-11 | ||||
TrEMBL | A0A0Q3JU15 | 1e-147 | A0A0Q3JU15_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G23756.1 | 1e-136 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3900 | 32 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-20 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Brast06G080400.1.p |